3d9187d264d00ee8e681521bc2c942ee2527d4f1 max Wed May 13 07:33:38 2026 -0700 varFreqs: add WBBC (Westlake BioBank for Chinese) subtrack from the Phase I v20210103 release: 4,480 WGS samples, 78.6M variants, per-region frequencies for the 4 Han Chinese geographic subgroups (North/Central/South/Lingnan). databases.tsv + populations.tsv updated for the next varFreqsAll rebuild. refs #36642 Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> diff --git src/hg/makeDb/trackDb/human/varFreqs.ra src/hg/makeDb/trackDb/human/varFreqs.ra index 880534807ee..021c4d2f18c 100644 --- src/hg/makeDb/trackDb/human/varFreqs.ra +++ src/hg/makeDb/trackDb/human/varFreqs.ra @@ -337,30 +337,40 @@ #visibility pack #type vcfTabix #dataVersion May 2023 (v1.2.0) #priority 3 track tommo60kjpn shortLabel Japan ToMMo 61k WGS longLabel Variant Frequencies: Japan 61k - ToMMo SNV+Indels type vcfTabix parent varFreqs on bigDataUrl /gbdb/$D/varFreqs/tommo61kjpn/tommo-61kjpn-20250616-GRCh38-snvindel-af-autosome.vcf.gz visibility dense dataVersion 2025-06-16 priority 5 + track wbbc + shortLabel China WBBC 4.5k WGS + longLabel Variant Frequencies: Westlake BioBank for Chinese - 4,480 WGS, 4 regional Han groups + type vcfTabix + parent varFreqs on + bigDataUrl /gbdb/$D/varFreqs/wbbc/wbbc.vcf.gz + visibility dense + dataVersion Phase I v20210103 + priority 5.5 + track alfaVcf shortLabel NCBI ALFA 408k mixed longLabel Variant Frequencies: NCBI ALFA (dbGaP data) - 408k mixed WGS/WES/array, 163M variants type vcfTabix parent varFreqs on bigDataUrl /gbdb/$D/varFreqs/alfa/ALFA.vcf.gz visibility dense dataVersion R4 priority 4.1 url https://www.ncbi.nlm.nih.gov/snp/$$#frequency_tab urlLabel NCBI Variation Page track finngen parent varFreqs on visibility dense