c0de63cd3138fe9fae00a2c57f87a83fd2e236c6 mspeir Wed May 13 14:16:41 2026 -0700 Adding new page for stashing/embedding Genome Browser slide decks, refs #37292 diff --git docs/browserSlideDecks.md docs/browserSlideDecks.md new file mode 100644 index 00000000000..4a49ff7f196 --- /dev/null +++ docs/browserSlideDecks.md @@ -0,0 +1,33 @@ +--- +title: "UCSC Genome Browser Slide Decks" +--- + +This page collects training slides for the UCSC Genome Browser. Each slide deck +has been curated with a specific purpose, such as cancer data analysis. +Feel free to download these and use them in your courses or local trainings. +[Contact us](/contacts.html) to suggest new slide decks or improvements to the +current ones. + +## Slide Deck 1: UCSC Genome Browser Basics + +This slide deck covers basic features and navigation of the +[main genome browser display](/cgi-bin/hgTracks). This includes +configuring tracks, uploading custom data, and aligning sequences with BLAT. +[Download](https://docs.google.com/presentation/d/1yRAGCWx21KMFJophVfctcZETACFA3qgVkxkTbmVvA5U/edit?usp=sharing) +these slides to present them or modify them for your own use. + +<br> +<iframe src="https://docs.google.com/presentation/d/e/2PACX-1vQsrUr1DLp-KzcC9diMz-Mf7UDohlctbZKBZ0dPgHOX7bnTCw-5ag__PNQWf6Plp2_I2EipyzlpG4B7/pubembed?start=false&loop=false&delayms=60000" frameborder="0" width="480" height="299" allowfullscreen="true" mozallowfullscreen="true" webkitallowfullscreen="true" title="Slide Deck 1: UCSC Genome Browser Basics"></iframe> + +## Slide Deck 2: Cancer Data in the Genome Browser + +This slide deck provides an overview of cancer data hosted by the UCSC Genome +Browser (e.g. TCGA, OMIM, and GenCC) and how one might analyze cancer data +using Genome Browser tools. +[Download](https://docs.google.com/presentation/d/12agh_HbEriQADnhXM0LjbAxv5Oz7_W-qlS_vfXC0i14/edit?usp=sharing) +these slides to present them or modify them for your own use. + +<br> +<iframe src="https://docs.google.com/presentation/d/e/2PACX-1vSzR-IeJFHp6V6odCAxfaB0KxLyxzD4pqxKlOKMAikF25zjYI9LjqmfT5zmvc19qriH3Gholv047wQf/pubembed?start=false&loop=false&delayms=60000" frameborder="0" width="480" height="299" allowfullscreen="true" mozallowfullscreen="true" webkitallowfullscreen="true" title="Slide Deck 2: Cancer Data in the Genome Browser"></iframe> + +