b8eab6d5d1b4da39007b0590d5813f205f0dff74
brianlee
  Fri May 22 09:05:07 2026 -0700
Staging 2026Q3 (09-30) ADGC1 new milestone updates (ADGC1_Y4_)

diff --git src/hg/cirm/gateway/htdocs/sspsygeneTimeline.html src/hg/cirm/gateway/htdocs/sspsygeneTimeline.html
index 945319da72c..43309ac622e 100755
--- src/hg/cirm/gateway/htdocs/sspsygeneTimeline.html
+++ src/hg/cirm/gateway/htdocs/sspsygeneTimeline.html
@@ -54,53 +54,58 @@
 
     click year3_ucla href "https://docs.google.com/spreadsheets/d/1Ml_UXDHE4UZo2kjLp1aZLa0KxLtLSnVi/edit?gid=1138387919#gid=1138387919&range=J1:M20"
         
     section AIM 1 
 
     section AIM 2
     Quantify proliferation rates/IF/morphology of IPSC/NPC/Neurons from Capstone Lines   10 genes, 22 iPSC lines (20 NPD + 2 ctrl) × 2 backgrounds  : crit, milestone, ADGC1_I_8, 2025-03-31, 0d
     Quantify proliferation rates/IF/morphology of IPSC/NPC/Neurons from BATCH B   10 genes, 22 iPSC lines (20 NPD + 2 ctrl) × 2 backgrounds : active, milestone, ADGC1_JK_8, 2025-09-30, 0d
     Quantify proliferation rates/IF/morphology of IPSC/NPC/Neurons from BATCH C   10 genes, 22 iPSC lines (20 NPD + 2 ctrl) × 2 backgrounds : crit, milestone, ADGC1_LM_8, 2026-03-31, 0d
     Quantify proliferation rates/IF/morphology of IPSC/NPC/Neurons from BATCH D   10 genes, 22 iPSC lines (20 NPD + 2 ctrl) × 2 backgrounds : crit, milestone, ADGC1_NO_8, 2026-09-30, 0d
     Quantify proliferation rates/IF/morphology of IPSC/NPC/Neurons from BATCH E   10 genes, 22 iPSC lines (20 NPD + 2 ctrl) × 2 backgrounds : crit, milestone, ADGC1_P_8, 2026-12-31, 0d
     Quantify proliferation rates/IF/morphology of IPSC/NPC/Neurons from BATCH F   10 genes, 22 iPSC lines (20 NPD + 2 ctrl) × 2 backgrounds : crit, milestone, ADGC1_Q_8, 2027-03-31, 0d
     Submit L0-L1 from BATCH B, producing bulk RNA-seq profiles 3 tech reps, 4 bio reps/gene × (20 NPD + 2 ctrl) × 2 (KOLF2.2J/CIRM) iPSC lines; .fastq : crit, milestone, ADGC1_LM_111213, 2026-03-31, 0d
     Submit L0-L1 from BATCH C, producing bulk RNA-seq profiles 3 tech reps, 4 bio reps/gene × (20 NPD + 2 ctrl) × 2 (KOLF2.2J/CIRM) iPSC lines; .fastq : crit, milestone, ADGC1_NO_111213, 2026-09-30, 0d
     Submit L0-L1 from BATCH D, producing bulk RNA-seq profiles 3 tech reps, 4 bio reps/gene × (20 NPD + 2 ctrl) × 2 (KOLF2.2J/CIRM) iPSC lines; .fastq : crit, milestone, ADGC1_P_111213, 2026-12-31, 0d
-    Submit L0-L1 from BATCH E-G, producing bulk RNA-seq profiles 3 tech reps, 4 bio reps/gene × (20 NPD + 2 ctrl) × 2 (KOLF2.2J/CIRM) iPSC lines; .fastq : crit, milestone, ADGC1_Q_111213, 2027-03-31, 0d
+%%    Submit L0-L1 from BATCH E-G, producing bulk RNA-seq profiles 3 tech reps, 4 bio reps/gene × (20 NPD + 2 ctrl) × 2 (KOLF2.2J/CIRM) iPSC lines; .fastq : crit, milestone, ADGC1_Q_111213, 2027-03-31, 0d
+    Submit Batch F, producing bulk RNA-seq profiles 4 reps/gene x (10 NPD + 2 ctrl) x 1 (KOLF2.2J/CIRM) iPSC background lines; fastq : crit, milestone, ADGC1_Y4_O_13, 2026-09-30, 0d
     Complete villages - submit L0-L1 to DRACC   : crit, milestone, ADGC1_JK_14, 2025-09-30, 0d
     Village Analysis - submit L0-L1 to DRACC   : crit, milestone, ADGC1_LM_14, 2026-03-31, 0d
     Calcium Imaging Capstone Analysis 10 genes, 22 iPSC lines (20 NPD + 2 ctrl) × 2 backgrounds   : crit, milestone, ADGC1_K_15, 2025-09-30, 0d
     Calcium Imaging analysis excitatory/inhibitory neurons - Capstone Analysis 10 genes, 22 iPSC lines (20 NPD + 2 ctrl) × 2 backgrounds   : crit, milestone, ADGC1_M_15, 2026-03-31, 0d
     Calcium Imaging Experiments and analysis of future batches 10 genes, 22 iPSC lines (20 NPD + 2 ctrl) × 2 backgrounds (Submit L0-L4 to DRACC) : crit, milestone, ADGC1_NOPQ_15, 2027-03-31, 0d
+    Calcium Imaging excitatory neurons Batch F 2 time points, 4 replicates/gene, 4 NPD + 2 control iPSC lines, 2 backgrounds; TIFF) : crit, milestone, ADGC1_Y4_O_15, 2026-09-30, 0d
+    Perform StimScope ephys on lines with excitatory calcium imaging (Batches B–E); submit all data levels to DRACC : crit, milestone, ADGC1_Y4_O_16, 2026-09-30, 0d
     
     section AIM 3
     Perform codex Capstone Lines (10 Genes, 20 NPD iPSC lines + 2 control lines) x 2 iPSC background lines; 4 well replicates/line; qptiff format)   : crit, milestone, ADGC1_J_161718, 2025-06-30, 0d
     Spatial Proteomics Analysis Capstone Lines   : crit, milestone, ADGC1_K_161718, 2025-09-30, 0d
     Perform codex BATCH B (10 Genes, 20 NPD iPSC lines + 2 control lines) x 2 iPSC background lines; 4 well replicates/line; qptiff format)   : crit, milestone, ADGC1_L_161718, 2025-12-31, 0d
     Spatial Proteomics Analysis BATCH B   : crit, milestone, ADGC1_M_161718, 2026-03-31, 0d
     Perform codex BATCH C (10 Genes, 20 NPD iPSC lines + 2 control lines) x 2 iPSC background lines; 4 well replicates/line; qptiff format)   : crit, milestone, ADGC1_N_161718, 2027-03-31, 0d
     Spatial Proteomics Analysis BATCH C   : crit, milestone, ADGC1_O_161718, 2027-03-31, 0d
     Perform codex and analysis for future batches   : crit, milestone, ADGC1_Q_161718, 2027-03-31, 0d
+    Spatial Proteomics Analysis for Batch A-C - Submit L2-L4 Data to DRACC Upon Completion : crit, milestone, ADGC1_Y4_O_19, 2026-09-30, 0d
     Organoid snRNAseq analysis for Capstone Genes   : crit, milestone, ADGC1_J_1920, 2025-06-30, 0d
     Perform snRNAseq for BATCH B (10 Genes, 20 NPD iPSC lines + 2 control lines) x 2 iPSC background lines; 2-4 organoid replicates/line; tif format)   : crit, milestone, ADGC1_K_1920, 2025-09-30, 0d
     Organoid snRNAseq analysis for BATCH B   : crit, milestone, ADGC1_L_1920, 2025-12-31, 0d
     Perform snRNAseq for BATCH C (10 Genes, 20 NPD iPSC lines + 2 control lines) x 2 iPSC background lines; 2-4 organoid replicates/line; tif format)   : crit, milestone, ADGC1_M_1920, 2026-03-31, 0d
     Organoid snRNAseq analysis C   : crit, milestone, ADGC1_N_1920, 2027-03-31, 0d
     Perform Integrative analysis across first 30 genes and across experimental modalities (Spatial and snRNAseq). Submit L3-L4 level data by this time at the latest : crit, milestone, ADGC1_O_1920, 2027-03-31, 0d
     Perform snRNAseq for future batches   : crit, milestone, ADGC1_P_1920, 2026-12-31, 0d
     Organoid snRNAseq Analysis for future batches   : crit, milestone, ADGC1_Q_1920, 2027-03-31, 0d
+    Organoid snRNAseq analysis Batch A-C Submit L2-L4 Data to DRACC Upon Completion : crit, milestone, ADGC1_Y4_O_21, 2026-09-30, 0d
     
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   <div class="cirm-page-title back-light-blue"><h5 class="cirm-page-title-text">ADGC2 MiNND timeline</h5></div>
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         gantt
         dateFormat  YYYY-MM-DD
         axisFormat  %Y-Q%q
         title       ADGC2  MiNND [RM1MH133065]