55d9b1b7504ff9c43ad1173ae981a27d9212d773
hiram
  Thu May 21 11:48:01 2026 -0700
cron job safe full path names to kent commands refs #31811

diff --git src/hg/utils/automation/asmHubTOGA.pl src/hg/utils/automation/asmHubTOGA.pl
index 6d3bd940f49..343661dc2f1 100755
--- src/hg/utils/automation/asmHubTOGA.pl
+++ src/hg/utils/automation/asmHubTOGA.pl
@@ -36,33 +36,33 @@
   exit 255;
 }
 
 my $gcX = substr($asmId,0,3);
 my $d0 = substr($asmId,4,3);
 my $d1 = substr($asmId,7,3);
 my $d2 = substr($asmId,10,3);
 my (undef, $acc, undef) = split('_', $asmId, 3);
 my $accession = "${gcX}_${acc}";
 
 my $togaDir = dirname($TOGABbi);
 $togaDir =~ s#.*/trackData/##;
 
 my $bbFile = basename($TOGABbi);
 
-my $totalBases = `ave -col=2 $trackDataDir/../${asmId}.chrom.sizes | grep "^total" | awk '{printf "%d", \$2}'`;
+my $totalBases = `/cluster/bin/x86_64/ave -col=2 $trackDataDir/../${asmId}.chrom.sizes | grep "^total" | awk '{printf "%d", \$2}'`;
 chomp $totalBases;
-my $itemsBases = `bigBedInfo $TOGABbi | egrep "itemCount|basesCovered" | awk '{print \$NF}' | sed -e 's/,//g;' | xargs echo`;
+my $itemsBases = `/cluster/bin/x86_64/bigBedInfo $TOGABbi | egrep "itemCount|basesCovered" | awk '{print \$NF}' | sed -e 's/,//g;' | xargs echo`;
 my ($itemCount, $basesCovered) = split('\s+', $itemsBases);
 
 my $percentCoverage = sprintf("%.2f", 100.0 * $basesCovered / $totalBases);
 $itemCount = commify($itemCount);
 $basesCovered = commify($basesCovered);
 $totalBases = commify($totalBases);
 
 my $em = "<em>";
 my $noEm = "</em>";
 my $assemblyDate = `grep -v "^#" $namesFile | cut -f9`;
 chomp $assemblyDate;
 my $ncbiAssemblyId = `grep -v "^#" $namesFile | cut -f10`;
 chomp $ncbiAssemblyId;
 my $organism = `grep -v "^#" $namesFile | cut -f5`;
 chomp $organism;