9bfd58221b1539193cb7f0a317b4e959c1c7e49a
max
  Thu May 21 01:00:45 2026 -0700
varFreqs: AI generated text sounds bad, hard to read, so remove typical AI language. "humanizer" pass on all 31 varFreqs description pages — cut em dashes, copula avoidance ("serves as", "stands as"), "-ing" puffery, and boilerplate filler ("We provide documentation that indicates how..."). Title-case headings and meaningful <b> emphasis preserved. No facts/URLs/counts/versions changed. tpmi.html added as a new file (was previously uncommitted). refs #36642

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

diff --git src/hg/makeDb/trackDb/human/gasp.html src/hg/makeDb/trackDb/human/gasp.html
index 9a47fc8317c..62ee1ecc359 100644
--- src/hg/makeDb/trackDb/human/gasp.html
+++ src/hg/makeDb/trackDb/human/gasp.html
@@ -29,28 +29,28 @@
 2&times;100 bp or 2&times;150 bp paired-end reads at an average depth of 36x. Reads were aligned to
 GRCh37 using BWA-MEM. Duplicate reads were marked with SAMBLASTER and sorted with Sambamba.
 Per-sample variant calling was performed with GATK HaplotypeCaller in GVCF mode, followed by
 joint genotyping with GenotypeGVCFs. Variant quality score recalibration (VQSR) was applied at
 a 99% sensitivity tranche for both SNPs and indels. Sample-level QC included contamination
 checks with verifyBamID and sex concordance verification. The final callset contains
 &sim;65 million variants across 1,739 individuals from 219 populations.
 </p>
 <p>
 The upstream callset is on GRCh37. We lifted it to hg38 using
 <a href="https://crossmap.sourceforge.net/" target="_blank">CrossMap</a> and the UCSC
 <tt>hg19ToHg38</tt> chain file. After lifting, variants that landed on alt, random, fix, or
 unplaced contigs were dropped, and the result was sorted and indexed with tabix.
 </p>
 <p>
-We provide documentation that indicates how all source files of the varFreqs track were converted in the <a href="https://github.com/ucscGenomeBrowser/kent/blob/master/src/hg/makeDb/doc/hg38/varFreqs.txt" target="_blank">makeDoc file</a> of the track.
-For some tracks, python scripts were necessary and are also available from <a href="https://github.com/ucscGenomeBrowser/kent/blob/master/src/hg/makeDb/scripts/varFreqs" target="_blank">GitHub</a>.
+The <a href="https://github.com/ucscGenomeBrowser/kent/blob/master/src/hg/makeDb/doc/hg38/varFreqs.txt" target="_blank">makeDoc file</a> documents how all source files of the varFreqs track were converted.
+For some tracks, python scripts were needed and are also available from <a href="https://github.com/ucscGenomeBrowser/kent/blob/master/src/hg/makeDb/scripts/varFreqs" target="_blank">GitHub</a>.
 </p>
 
 <h2>References</h2>
 <p>
 GenomeAsia100K Consortium.
 <a href="https://doi.org/10.1038/s41586-019-1793-z" target="_blank">
 The GenomeAsia 100K Project enables genetic discoveries across Asia</a>.
 <em>Nature</em>. 2019 Dec;576(7785):106-111.
 PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/31802016" target="_blank">31802016</a>; PMC: <a
 href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7054211/" target="_blank">PMC7054211</a>
 </p>