9bfd58221b1539193cb7f0a317b4e959c1c7e49a
max
  Thu May 21 01:00:45 2026 -0700
varFreqs: AI generated text sounds bad, hard to read, so remove typical AI language. "humanizer" pass on all 31 varFreqs description pages — cut em dashes, copula avoidance ("serves as", "stands as"), "-ing" puffery, and boilerplate filler ("We provide documentation that indicates how..."). Title-case headings and meaningful <b> emphasis preserved. No facts/URLs/counts/versions changed. tpmi.html added as a new file (was previously uncommitted). refs #36642

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

diff --git src/hg/makeDb/trackDb/human/sfariSparkExomes.html src/hg/makeDb/trackDb/human/sfariSparkExomes.html
index 27e11ff2610..f3428e3fa2a 100644
--- src/hg/makeDb/trackDb/human/sfariSparkExomes.html
+++ src/hg/makeDb/trackDb/human/sfariSparkExomes.html
@@ -93,28 +93,28 @@
     (CHIP). SFARI performed SNV/indel calling via DeepVariant and
     GATK to generate gVCFs, pairwise relatedness inferred using
     PLINK v1.9 IBD estimates from common SNPs (AF &ge; 0.01, dbSNP
     v151) with &ge;15% relatedness flagged, and comprehensive
     individual- and family-level quality control executed using the
     internal GenomeCheckMate pipeline to exclude samples based on
     contamination (&ge;5%), insufficient coverage (&lt;20x in &lt;80% of
     targets), sex discordance, pedigree/IBD inconsistencies,
     unregistered relationships, unexpected duplicates, or excess
     relatedness, after which QC-passing individuals (selecting the
     most recent passing sample per person) were retained for
     variant calling and joint genotyping.
     </li>
 </ul>
 <p>
-We provide documentation that indicates how all source files of the varFreqs track were converted in the <a href="https://github.com/ucscGenomeBrowser/kent/blob/master/src/hg/makeDb/doc/hg38/varFreqs.txt" target="_blank">makeDoc file</a> of the track.
+The <a href="https://github.com/ucscGenomeBrowser/kent/blob/master/src/hg/makeDb/doc/hg38/varFreqs.txt" target="_blank">makeDoc file</a> documents how all source files of the varFreqs track were converted.
 For some tracks, python scripts were necessary and are also available from <a href="https://github.com/ucscGenomeBrowser/kent/blob/master/src/hg/makeDb/scripts/varFreqs" target="_blank">GitHub</a>.
 </p>
 
 <h2>References</h2>
 <p>
 SPARK Consortium. Electronic address: <A HREF="mailto:&#112;f&#101;&#108;&#105;&#99;&#105;&#97;&#110;o&#64;&#115;&#105;&#109;&#111;&#110;&#115;f&#111;&#117;&#110;&#100;a&#116;&#105;&#111;&#110;.&#111;&#114;g">&#112;f&#101;&#108;&#105;&#99;&#105;&#97;&#110;o&#64;&#115;&#105;&#109;&#111;&#110;&#115;f&#111;&#117;&#110;&#100;a&#116;&#105;&#111;&#110;.&#111;&#114;g</A><!-- above address is pfeliciano at simonsfoundation.org -->, SPARK Consortium.
 <a href="https://linkinghub.elsevier.com/retrieve/pii/S0896-6273(18)30018-7" target="_blank">
 SPARK: A US Cohort of 50,000 Families to Accelerate Autism Research</a>.
 <em>Neuron</em>. 2018 Feb 7;97(3):488-493.
 PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/29420931" target="_blank">29420931</a>; PMC: <a
 href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7444276/" target="_blank">PMC7444276</a>
 </p>