9bfd58221b1539193cb7f0a317b4e959c1c7e49a
max
  Thu May 21 01:00:45 2026 -0700
varFreqs: AI generated text sounds bad, hard to read, so remove typical AI language. "humanizer" pass on all 31 varFreqs description pages — cut em dashes, copula avoidance ("serves as", "stands as"), "-ing" puffery, and boilerplate filler ("We provide documentation that indicates how..."). Title-case headings and meaningful <b> emphasis preserved. No facts/URLs/counts/versions changed. tpmi.html added as a new file (was previously uncommitted). refs #36642

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

diff --git src/hg/makeDb/trackDb/human/tommo60kjpn.html src/hg/makeDb/trackDb/human/tommo60kjpn.html
index 3f4bffafb4c..6660e126066 100644
--- src/hg/makeDb/trackDb/human/tommo60kjpn.html
+++ src/hg/makeDb/trackDb/human/tommo60kjpn.html
@@ -19,32 +19,32 @@
 </p>
 <p>
 The original data can also be downloaded from the <a href="https://jmorp.megabank.tohoku.ac.jp"
 target="_blank">jMorp website</a>, specifically the
 <a href="https://jmorp.megabank.tohoku.ac.jp/downloads" target="_blank">Downloads</a> section.
 </p>
 
 <h2>Methods</h2>
 <p>
 Genomic DNA was obtained from peripheral blood, saliva, or cord blood samples. Sequencing was
 performed on Illumina HiSeq 2500, HiSeq X Five, NovaSeq 6000, and MGI DNBSeq G400/T7 instruments.
 Reads were aligned to the GRCh38 reference using BWA 0.7.15 or BWA-mem2 2.1. Alignments underwent
 base quality score recalibration (BQSR) with the GATK BaseRecalibrator tool. SNV/indel calling was
 performed using GATK HaplotypeCaller, followed by multisample joint genotyping with Sentieon
 Genomics tools and variant quality score recalibration (VQSR) filtering. Related samples were
-identified and removed using KING 2.3.1, resulting in the final allele frequency panel.
+identified and removed with KING 2.3.1 to produce the final allele frequency panel.
 </p>
 <p>
-We provide documentation that indicates how all source files of the varFreqs track were converted in the <a href="https://github.com/ucscGenomeBrowser/kent/blob/master/src/hg/makeDb/doc/hg38/varFreqs.txt" target="_blank">makeDoc file</a> of the track.
-For some tracks, python scripts were necessary and are also available from <a href="https://github.com/ucscGenomeBrowser/kent/blob/master/src/hg/makeDb/scripts/varFreqs" target="_blank">GitHub</a>.
+The <a href="https://github.com/ucscGenomeBrowser/kent/blob/master/src/hg/makeDb/doc/hg38/varFreqs.txt" target="_blank">makeDoc file</a> for this track describes how all source files of the varFreqs track were converted.
+For some tracks, python scripts were needed and are available from <a href="https://github.com/ucscGenomeBrowser/kent/blob/master/src/hg/makeDb/scripts/varFreqs" target="_blank">GitHub</a>.
 </p>
 
 <h2>References</h2>
 <p>
 Tadaka S, Kawashima J, Hishinuma E, Saito S, Okamura Y, Otsuki A, Kojima K, Komaki S, Aoki Y, Kanno
 T <em>et al</em>.
 <a href="https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gkad978" target="_blank">
 jMorp: Japanese Multi-Omics Reference Panel update report 2023</a>.
 <em>Nucleic Acids Res</em>. 2024 Jan 5;52(D1):D622-D632.
 PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/37930845" target="_blank">37930845</a>; PMC: <a
 href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10767895/" target="_blank">PMC10767895</a>
 </p>