0ef7d0ffeea25371b4828fc23051cdd27598439f max Wed May 20 14:57:51 2026 -0700 varFreqs: add Genome of the Netherlands (GoNL) subtrack on hg38, GRCh38 re-analysis v1.0, 498 unrelated parents (250 fathers + 248 mothers), 36.4M biallelic records after dropping decoy/EBV contigs and bcftools norm split+left-align, refs #36642 Co-Authored-By: Claude Sonnet 4.6 diff --git src/hg/makeDb/trackDb/human/varFreqs.ra src/hg/makeDb/trackDb/human/varFreqs.ra index 9f22710443c..cc57ab88606 100644 --- src/hg/makeDb/trackDb/human/varFreqs.ra +++ src/hg/makeDb/trackDb/human/varFreqs.ra @@ -446,30 +446,40 @@ priority 4.6 bigDataUrl /gbdb/$D/varFreqs/ukbb/ukbb.vcf.gz dataVersion Neale Lab R2 08-2018 track swefreq parent varFreqs on visibility hide type vcfTabix shortLabel Sweden SweGen 1k WGS longLabel Variant Frequencies: Sweden SweGen - 1k WGS priority 4.7 bigDataUrl /gbdb/$D/varFreqs/_swefreq/swegen_frequencies_fixploidy_GRCh38_20190204.vcf.gz dataVersion 20251201 tableBrowser off + track gonl + parent varFreqs on + visibility hide + type vcfTabix + shortLabel Netherlands GoNL 498 WGS + longLabel Variant Frequencies: Genome of the Netherlands - 250 Dutch trios + priority 4.75 + bigDataUrl /gbdb/$D/varFreqs/gonl/gonl.vcf.gz + dataVersion GRCh38 1.0 + track mgrb shortLabel Australia MGRB 4k WGS longLabel Variant Frequencies: Australia Medical Genome Reference Bank - 4,011 WGS type vcfTabix parent varFreqs on bigDataUrl /gbdb/$D/varFreqs/_mgrb/MGRB.phase3.GRCh38.norm.vcf.gz dataVersion Phase 3 visibility hide # no downloads as per Matt Hobbs email Jan 28 2026 tableBrowser off track gasp shortLabel GenomeAsia 1.7k SNVs longLabel Variant Frequencies: GenomeAsia Pilot - Substitutions type vcfTabix