4a1651999514d41b9ed33cbd8ee7ceee08df21eb Merge parents 9eb4e093778 b937bbf5930 max Sat Jun 13 23:28:59 2026 -0700 removing kim diff --cc src/hg/makeDb/trackDb/human/lrSv.ra index 0a2042555f0,ec781f1cf8f..6e060aa567d --- src/hg/makeDb/trackDb/human/lrSv.ra +++ src/hg/makeDb/trackDb/human/lrSv.ra @@@ -1,555 -1,564 +1,559 @@@ track lrSv superTrack on shortLabel Long-read SVs longLabel Structural Variants from Long-read Sequencing group varRep visibility hide # Supertrack-level filters. These are rendered on the supertrack's own # hgTrackUi page (superTrackUi in hgTrackUi.c). Cart values stored under # "lrSv.filter.<field>.min/max" are inherited at read time by every # subtrack via cartOptionalStringClosestToHome() walking tdb->parent. A # subtrack-level filter always wins over the supertrack-level one. filterValues.svType DEL|DEL (Deletion),INS|INS (Insertion),INV|INV (Inversion),CPX|CPX (Complex rearrangement),DUP|DUP (Duplication),CNV|CNV (Copy-number variant),CTX|CTX (Chromosomal translocation),INSDEL|INSDEL (Insertion-deletion),MIXED|MIXED (multi-allele snarl),BND|BND (Breakend / translocation),MEI|MEI (Mobile element insertion),TRA|TRA (Translocation) filterType.svType multipleListOr filterLabel.svType SV Type filter.svLen 0:250000000 filterByRange.svLen on filterLabel.svLen SV Length (bp) filter.insLen 0:30176500 filterByRange.insLen on filterLabel.insLen Insertion Length (bp) filter.AC 0:30000 filterByRange.AC on filterLabel.AC Allele Count noScoreFilter on include lrSvAll.ra track colorsDbSv parent lrSv bigDataUrl /gbdb/$D/lrSv/colorsDb/sv.$D.bb shortLabel CoLoRSdb 1427 SVs longLabel Structural Variants from CoLoRSdb (Consortium of Long-Read Sequencing, 1,427 Samples) type bigBed 9 + itemRgb on - visibility dense + visibility hide dataVersion v1.2.0 mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen AF=$AF AC=$AC/$AN (Hom:$acHom Het:$acHet Hemi:$acHemi) samples=$NS filterValues.svType DEL,INS,INV,DUP filterType.svType multipleListOr filterLabel.svType SV Type filter.svLen 0:101381 filterByRange.svLen on filterLabel.svLen SV Length (bp) filter.insLen 0:18724 filterByRange.insLen on filterLabel.insLen Insertion Length (bp) filter.AC 0:2854 filterByRange.AC on filterLabel.AC Alt Allele Count (AC) filter.AF 0:1 filterByRange.AF on filterLimits.AF 0:1 filterLabel.AF Allele Frequency (AF) skipEmptyFields on priority 1 track lrSv1kgOnt parent lrSv bigDataUrl /gbdb/$D/lrSv/1kgOnt.bb shortLabel 1KG ONT 1019 SVs longLabel Structural Variants from 1,019 Diverse Humans (Vienna ONT, Schloissnig et al. 2025) type bigBed 9 + itemRgb on - visibility dense + visibility hide mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen type=$insType family=$family AC=$AC AF=$alleleFreq filterValues.svType DEL,INS,CPX filterType.svType multipleListOr filterLabel.svType SV Type filterValues.insType COMPLEX_DUP,DUP,DUP_INTERSPERSED,INV_DUP,NUMT,PSD,VNTR,chimera,orphan,partnered,solo filterType.insType multipleListOr filterLabel.insType Insertion/Deletion Type filterValues.family Alu,HERVK,L1,LTR5_Hs,SVA filterType.family multipleListOr filterLabel.family Transposon Family filter.svLen 0:49171 filterByRange.svLen on filterLabel.svLen SV Length filter.insLen 0:48091 filterByRange.insLen on filterLabel.insLen Insertion Length filterByRange.alleleFreq on filterLimits.alleleFreq 0:1 filterLabel.alleleFreq Allele Frequency filter.AC 0:1816 filterByRange.AC on filterLabel.AC Allele Count skipEmptyFields on dataVersion 1.1 priority 2 track gustafsonSv parent lrSv bigDataUrl /gbdb/$D/lrSv/gustafson.bb shortLabel 1KG ONT 100 SVs longLabel Structural Variants from 100 1000 Genomes ONT Samples (Gustafson et al. 2024) type bigBed 9 + itemRgb on - visibility dense + visibility hide mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen AC=$AC samples=$sampleCount filterValues.svType DEL,INS,DUP,INV filterType.svType multipleListOr filterLabel.svType SV Type filter.svLen 0:98289 filterByRange.svLen on filterLabel.svLen SV Length filter.insLen 0:25094 filterByRange.insLen on filterLabel.insLen Insertion Length filter.AC 0:200 filterByRange.AC on filterLabel.AC Allele Count (placeholder) filter.sampleCount 1:100 filterByRange.sampleCount on filterLabel.sampleCount Number of Carrier Samples skipEmptyFields on priority 3 track aou1kSv parent lrSv bigDataUrl /gbdb/$D/lrSv/aou1k.bb shortLabel AoU 1027 SVs longLabel Structural Variants from 1,027 AoU Individuals (PacBio HiFi Long-read) type bigBed 9 + itemRgb on - visibility dense + visibility hide mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen AC~$AC AF_AFR=$afAfr AF_EUR=$afEur filterValues.svType DEL,INS filterType.svType multipleListOr filterLabel.svType SV Type filter.svLen 0:9905 filterByRange.svLen on filterLabel.svLen SV Length filter.insLen 0:9998 filterByRange.insLen on filterLabel.insLen Insertion Length filter.AC 0:2054 filterByRange.AC on filterLabel.AC Allele Count (approx) filterByRange.afAfr on filterLimits.afAfr 0:1 filterLabel.afAfr AF African filterByRange.afEur on filterLimits.afEur 0:1 filterLabel.afEur AF European filterByRange.afEas on filterLimits.afEas 0:1 filterLabel.afEas AF East Asian skipEmptyFields on track han945Sv parent lrSv bigDataUrl /gbdb/$D/lrSv/han945.bb shortLabel Han 945 SVs longLabel Structural Variants from 945 Han Chinese (Long-read Sequencing) type bigBed 9 + itemRgb on - visibility dense + visibility hide mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen AF=$alleleFreq AC=$AC samples=$sampleCount filterValues.svType DEL,INS,DUP,INV,TRA filterType.svType multipleListOr filterLabel.svType SV Type filter.svLen 0:99743 filterByRange.svLen on filterLabel.svLen SV Length filter.insLen 0:27242 filterByRange.insLen on filterLabel.insLen Insertion Length filter.AC 0:1890 filterByRange.AC on filterLabel.AC Allele Count (approx 2*SUPP) filter.sampleCount 1:945 filterByRange.sampleCount on filterLabel.sampleCount Number of Supporting Samples filter.alleleFreq 0:1 filterByRange.alleleFreq on filterLimits.alleleFreq 0:1 filterLabel.alleleFreq Allele Frequency skipEmptyFields on urls chr2="hgTracks?position=$$" track tommoJpSv parent lrSv bigDataUrl /gbdb/$D/lrSv/tommoJp.bb shortLabel ToMMo 333 SVs longLabel Structural Variants from 333 Japanese Individuals (ToMMo, 111 Trios) type bigBed 9 + itemRgb on - visibility dense + visibility hide mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen AF=$alleleFreq AC=$AC filterValues.svType DEL,INS filterType.svType multipleListOr filterLabel.svType SV Type filter.svLen 0:99985 filterByRange.svLen on filterLabel.svLen SV Length filter.insLen 0:30649 filterByRange.insLen on filterLabel.insLen Insertion Length filter.alleleFreq 0:1 filterByRange.alleleFreq on filterLimits.alleleFreq 0:1 filterLabel.alleleFreq Allele Frequency filter.AC 0:444 filterByRange.AC on filterLabel.AC Allele Count track ga4kSv parent lrSv bigDataUrl /gbdb/$D/lrSv/ga4kSv.bb shortLabel GA4K 502 SVs longLabel Structural Variants from 502 Children's Mercy GA4K Probands (PacBio HiFi) type bigBed 9 + itemRgb on - visibility dense + visibility hide mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen AC~$AC AF=$alleleFreq carriers=$carrierCount/$sampleTotal filterValues.svType DEL,INS,DUP,INV filterType.svType multipleListOr filterLabel.svType SV Type filter.svLen 0:809711 filterByRange.svLen on filterLabel.svLen SV Length filter.insLen 0:14923 filterByRange.insLen on filterLabel.insLen Insertion Length filter.AC 0:996 filterByRange.AC on filterLabel.AC Allele Count (approx) filter.alleleFreq 0:1 filterByRange.alleleFreq on filterLimits.alleleFreq 0:1 filterLabel.alleleFreq Allele Frequency filter.carrierCount 1:498 filterByRange.carrierCount on filterLabel.carrierCount Number of Carrier Samples track decodeSv parent lrSv bigDataUrl /gbdb/$D/lrSv/decodeSv.bb shortLabel deCODE 3622 SVs longLabel High-confidence Structural Variants from 3,622 Icelanders (deCODE, Oxford Nanopore) type bigBed 9 + itemRgb on - visibility dense + visibility hide - mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen AC=$AC (placeholder) + mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen filterValues.svType DEL,INS,INSDEL filterType.svType multipleListOr filterLabel.svType SV Type filter.svLen 0:861080 filterByRange.svLen on filterLabel.svLen SV Length filter.insLen 0:22130 filterByRange.insLen on filterLabel.insLen Insertion Length - filter.AC 0:50 - filterByRange.AC on - filterLabel.AC Allele Count (placeholder 50) skipEmptyFields on track hprc2v21Sv parent lrSv bigDataUrl /gbdb/$D/lrSv/hprc2v21.bb shortLabel HPRC v2.1 233 SVs - longLabel Structural Variants from the HPRC v2.1 Pangenome Graph (233 samples, minigraph-cactus, raw deconstruct) + longLabel Structural Variants from HPRC v2.1 Pangenome Graph (233 samples, minigraph-cactus) type bigBed 9 + itemRgb on - visibility dense + visibility hide mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen AF=$alleleFreq AC=$AC/$alleleNumber samples=$nSamples filterValues.svType INS,DEL filterType.svType multipleListOr filterLabel.svType SV Type filter.svLen 0:99835 filterByRange.svLen on filterLabel.svLen SV Length filter.insLen 0:1064897 filterByRange.insLen on filterLabel.insLen Insertion Length filter.AC 0:463 filterByRange.AC on filterLabel.AC Allele Count filter.alleleFreq 0:1 filterByRange.alleleFreq on filterLimits.alleleFreq 0:1 filterLabel.alleleFreq Allele Frequency filter.snarlLevel 0:7 filterByRange.snarlLevel on filterLabel.snarlLevel Snarl Level skipEmptyFields on - track hprc2JasmineSv - parent lrSv - bigDataUrl /gbdb/$D/lrSv/hprc2Jasmine.bb - shortLabel HPRC2 Jasmine 231 SVs - longLabel Structural Variants from 231 HPRC v2 Assemblies (14 SV Callers, Jasmine-merged; Hall Lab / Liao) - type bigBed 9 + - itemRgb on - visibility dense - mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen samples=$nSamples/$alleleNumber AF=$alleleFreq callers=$nCallers ($callers) - filterValues.svType DEL,INS - filterType.svType multipleListOr - filterLabel.svType SV Type - filter.svLen 0:30176500 - filterByRange.svLen on - filterLabel.svLen SV Length - filter.insLen 0:30176500 - filterByRange.insLen on - filterLabel.insLen Insertion Length - filter.AC 0:231 - filterByRange.AC on - filterLabel.AC Carrier Sample Count - filter.alleleFreq 0:1 - filterByRange.alleleFreq on - filterLimits.alleleFreq 0:1 - filterLabel.alleleFreq Carrier Frequency - filter.nCallers 1:14 - filterByRange.nCallers on - filterLabel.nCallers Number of Supporting Callers - filterValues.callers DELLY,DeBreak,DeepVariant,PAV,SVDSS,SVIM,SVIM-asm,Sniffles2,cuteSV,cuteSV-asm,dipcall,longcallD,pbsv,sawfish - filterType.callers multipleListAnd - filterLabel.callers Supporting Callers - filterValues.sources PAV,dipcall,longcallD - filterType.sources multipleListAnd - filterLabel.sources Source Pipeline - skipEmptyFields on + # hprc2JasmineSv commented out: the Jasmine-merged HPRC v2 multi-caller + # set is a test/comparison callset (the Hall lab is not happy with it) and + # is not for release. bigBed, .as, converter and makeDoc are retained. + # refs #36258 + #track hprc2JasmineSv + #parent lrSv + #bigDataUrl /gbdb/$D/lrSv/hprc2Jasmine.bb + #shortLabel HPRC2 Jasmine 231 SVs + #longLabel Structural Variants from 231 HPRC v2 Assemblies (Jasmine merge of 14 SV callers) + #type bigBed 9 + + #itemRgb on + #visibility dense + #mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen samples=$nSamples/$alleleNumber AF=$alleleFreq callers=$nCallers ($callers) + #filterValues.svType DEL,INS + #filterType.svType multipleListOr + #filterLabel.svType SV Type + #filter.svLen 0:30176500 + #filterByRange.svLen on + #filterLabel.svLen SV Length + #filter.insLen 0:30176500 + #filterByRange.insLen on + #filterLabel.insLen Insertion Length + #filter.AC 0:231 + #filterByRange.AC on + #filterLabel.AC Carrier Sample Count + #filter.alleleFreq 0:1 + #filterByRange.alleleFreq on + #filterLimits.alleleFreq 0:1 + #filterLabel.alleleFreq Carrier Frequency + #filter.nCallers 1:14 + #filterByRange.nCallers on + #filterLabel.nCallers Number of Supporting Callers + #filterValues.callers DELLY,DeBreak,DeepVariant,PAV,SVDSS,SVIM,SVIM-asm,Sniffles2,cuteSV,cuteSV-asm,dipcall,longcallD,pbsv,sawfish + #filterType.callers multipleListAnd + #filterLabel.callers Supporting Callers + #filterValues.sources PAV,dipcall,longcallD + #filterType.sources multipleListAnd + #filterLabel.sources Source Pipeline + #skipEmptyFields on track hgsvc2Sv parent lrSv bigDataUrl /gbdb/$D/lrSv/hgsvc2.bb shortLabel HGSVC2 32 SVs longLabel Structural Variants from 32 Haplotype-Resolved Genomes (HGSVC2 freeze 4, Ebert 2021) type bigBed 9 + itemRgb on - visibility dense + visibility hide mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen samples=$sampleCount AC=$AC AF=$popAllAf filterValues.svType DEL,INS,INV filterType.svType multipleListOr filterLabel.svType SV Type filter.svLen 0:57207414 filterByRange.svLen on filterLabel.svLen SV Length filter.insLen 0:108546 filterByRange.insLen on filterLabel.insLen Insertion Length filter.AC 1:35 filterByRange.AC on filterLabel.AC Allele Count (carrier haplotypes) filter.sampleCount 1:35 filterByRange.sampleCount on filterLabel.sampleCount Sample Count filterValues.refTrf True,False filterType.refTrf multipleListOr filterLabel.refTrf In Tandem Repeat filter.refSd 0:1 filterByRange.refSd on filterLimits.refSd 0:1 filterLabel.refSd Segmental Duplication Overlap skipEmptyFields on track hgsvc3Sv parent lrSv bigDataUrl /gbdb/$D/lrSv/hgsvc3.bb shortLabel HGSVC3 65 SVs longLabel Structural Variants from 65 Diverse Samples (HGSVC3 ONT+HIFI) type bigBed 9 + itemRgb on - visibility dense + visibility hide mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen samples=$sampleCount AC=$AC filterValues.svType DEL,INS,INV filterType.svType multipleListOr filterLabel.svType SV Type filter.svLen 0:30176500 filterByRange.svLen on filterLabel.svLen SV Length filter.insLen 0:30176500 filterByRange.insLen on filterLabel.insLen Insertion Length filter.AC 1:136 filterByRange.AC on filterLabel.AC Allele Count (carrier haplotypes) filter.sampleCount 1:65 filterByRange.sampleCount on filterLabel.sampleCount Sample Count filterValues.refTrf True,False filterType.refTrf multipleListOr filterLabel.refTrf In Tandem Repeat filter.refSd 0:1 filterByRange.refSd on filterLimits.refSd 0:1 filterLabel.refSd Segmental Duplication Overlap skipEmptyFields on - # kwanhoSv commented out: the Kim PD brain callset is preliminary and - # unpublished (the description page says do not release until publication), - # and carries breakend artifacts up to ~190 Mb. Held off dev/alpha until a - # paper is out. bigBed, .as, converter and makeDoc are retained. The - # pending lrSvAll rebuild will also drop KimPD from databases.tsv so it - # leaves the merged track. refs #36258 - #track kwanhoSv - #parent lrSv - #bigDataUrl /gbdb/$D/lrSv/kwanho.bb - #shortLabel Kim PD 100 prelim - #longLabel Structural Variants from 100 Post-mortem Brains (Parkinson's disease, ILBD, Control; Kim et al. 2026, PacBio HiFi) - PRELIMINARY, data to be updated, contact the authors before using - #type bigBed 9 + - #itemRgb on - #visibility dense - #mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen AC=$AC AF_PD=$afPd AF_HC=$afHc diff=$differentialRate - #filterValues.svType DEL,INS,DUP,INV - #filterType.svType multipleListOr - #filterLabel.svType SV Type - #filter.svLen 0:200000000 - #filterByRange.svLen on - #filterLabel.svLen SV Length - #filter.insLen 0:20145 - #filterByRange.insLen on - #filterLabel.insLen Insertion Length - #filter.AC 0:200 - #filterByRange.AC on - #filterLabel.AC Allele Count (PD+HC+ILBD) - #filter.qual 0:100 - #filterByRange.qual on - #filterLabel.qual Quality - #filter.afPd 0:1 - #filterByRange.afPd on - #filterLimits.afPd 0:1 - #filterLabel.afPd Allele Frequency (PD) - #filter.afHc 0:1 - #filterByRange.afHc on - #filterLimits.afHc 0:1 - #filterLabel.afHc Allele Frequency (HC) - #filter.afIlbd 0:1 - #filterByRange.afIlbd on - #filterLimits.afIlbd 0:1 - #filterLabel.afIlbd Allele Frequency (ILBD) - #filter.differentialRate -1:1 - #filterByRange.differentialRate on - #filterLimits.differentialRate -1:1 - #filterLabel.differentialRate Case-Control Differential (case - control) - #skipEmptyFields on + # NOT FOR RELEASE: preliminary and unpublished (Kim et al. 2026 not out yet), + # and the callset has breakend artifacts up to 190 Mb (e.g. a single "INV" + # spanning all of chr4). Held on dev/alpha and kept out of the lrSvAll merge + # (removed from databases.tsv) until the data is published and cleaned. + track kwanhoSv + parent lrSv + bigDataUrl /gbdb/$D/lrSv/kwanho.bb + shortLabel Kim PD 100 prelim + longLabel Structural Variants from 100 Post-mortem Brains (Parkinson's disease, ILBD, Control; Kim et al. 2026, PacBio HiFi) - PRELIMINARY, data to be updated, contact the authors before using + type bigBed 9 + + itemRgb on + visibility dense + mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen AC=$AC AF_PD=$afPd AF_HC=$afHc diff=$differentialRate + filterValues.svType DEL,INS,DUP,INV + filterType.svType multipleListOr + filterLabel.svType SV Type + filter.svLen 0:200000000 + filterByRange.svLen on + filterLabel.svLen SV Length + filter.insLen 0:20145 + filterByRange.insLen on + filterLabel.insLen Insertion Length + filter.AC 0:200 + filterByRange.AC on + filterLabel.AC Allele Count (PD+HC+ILBD) + filter.qual 0:100 + filterByRange.qual on + filterLabel.qual Quality + filter.afPd 0:1 + filterByRange.afPd on + filterLimits.afPd 0:1 + filterLabel.afPd Allele Frequency (PD) + filter.afHc 0:1 + filterByRange.afHc on + filterLimits.afHc 0:1 + filterLabel.afHc Allele Frequency (HC) + filter.afIlbd 0:1 + filterByRange.afIlbd on + filterLimits.afIlbd 0:1 + filterLabel.afIlbd Allele Frequency (ILBD) + filter.differentialRate -1:1 + filterByRange.differentialRate on + filterLimits.differentialRate -1:1 + filterLabel.differentialRate Case-Control Differential (case - control) + skipEmptyFields on track aprSv parent lrSv bigDataUrl /gbdb/$D/lrSv/apr.bb shortLabel Arab APR 53 SVs longLabel Structural Variants from the Arab Pangenome Reference (53 UAE-resident Arab samples) type bigBed 9 + itemRgb on - visibility dense + visibility hide mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen AC=$AC/$alleleNumber AF=$alleleFreq samples=$numSamples alts=$numAlts filterValues.svType INS,DEL,CPX,MIXED filterType.svType multipleListOr filterLabel.svType SV Type filter.svLen 0:99885 filterByRange.svLen on filterLabel.svLen SV Length filter.insLen 0:584016 filterByRange.insLen on filterLabel.insLen Insertion Length filter.AC 0:107 filterByRange.AC on filterLabel.AC Allele Count filterByRange.alleleFreq on filterLimits.alleleFreq 0:1 filterLabel.alleleFreq Allele Frequency skipEmptyFields on track cpc1Sv parent lrSv bigDataUrl /gbdb/$D/lrSv/cpc1.bb shortLabel CPC 58 SVs longLabel Structural Variants from the Chinese Pangenome Consortium (58 samples, CPC-only) type bigBed 9 + itemRgb on - visibility dense + visibility hide mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen AC=$AC/$alleleNumber AF=$alleleFreq samples=$numSamples alts=$numAlts filterValues.svType INS,DEL,CPX,MIXED filterType.svType multipleListOr filterLabel.svType SV Type filter.svLen 0:8998096 filterByRange.svLen on filterLabel.svLen SV Length filter.insLen 0:376583 filterByRange.insLen on filterLabel.insLen Insertion Length filter.AC 0:116 filterByRange.AC on filterLabel.AC Allele Count filterByRange.alleleFreq on filterLimits.alleleFreq 0:1 filterLabel.alleleFreq Allele Frequency skipEmptyFields on track chirmade101Sv parent lrSv bigDataUrl /gbdb/$D/lrSv/chirmade101.bb shortLabel SVatalog 101 SVs longLabel Structural Variants from 101 Long-read WGS (GWAS SVatalog, Chirmade 2026) type bigBed 9 + itemRgb on - visibility dense + visibility hide mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen genes=$geneCount filterValues.svType DEL,INS,DUP,INV,CPX filterType.svType multipleListOr filterLabel.svType SV Type filter.svLen 0:1321484 filterByRange.svLen on filterLabel.svLen SV Length filter.insLen 0:31711 filterByRange.insLen on filterLabel.insLen Insertion Length filter.geneCount 0:200 filterByRange.geneCount on filterLabel.geneCount Gene Count skipEmptyFields on # NOT FOR RELEASE: data received from Eichler lab via email, not yet published. # Do not add to lrSvAll merged track until a preprint or paper is available. track lrSv1kLin parent lrSv bigDataUrl /gbdb/$D/lrSv/lin1218.bb shortLabel 1KG Linear 1218 SVs - longLabel Structural Variants from 1,218 Individuals (1000 Genomes, Linear Long-read Sequencing) + longLabel Structural Variants from 1,218 Individuals (1000 Genomes, Linear Long-read) type bigBed 9 + itemRgb on - visibility dense + visibility hide mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen AC=$AC/$AN AF=$AF AF_AFR=$afAfr AF_EUR=$afEur samples=$NS filterValues.svType DEL,INS filterType.svType multipleListOr filterLabel.svType SV Type filter.svLen 0:99565 filterByRange.svLen on filterLabel.svLen SV Length (bp) filter.insLen 0:99968 filterByRange.insLen on filterLabel.insLen Insertion Length (bp) filter.AC 0:2436 filterByRange.AC on filterLabel.AC Allele Count filter.AF 0:1 filterByRange.AF on filterLimits.AF 0:1 filterLabel.AF Allele Frequency filterByRange.afAfr on filterLimits.afAfr 0:1 filterLabel.afAfr AF African filterByRange.afAmr on filterLimits.afAmr 0:1 filterLabel.afAmr AF Admixed American filterByRange.afEas on filterLimits.afEas 0:1 filterLabel.afEas AF East Asian filterByRange.afEur on filterLimits.afEur 0:1 filterLabel.afEur AF European filterByRange.afSas on filterLimits.afSas 0:1 filterLabel.afSas AF South Asian filter.NS 1:1218 filterByRange.NS on filterLabel.NS Samples with Genotype Data skipEmptyFields on