File Changes for jcasper

v501_preview2 to v501_base (2026-07-13 to 2026-07-20) v501

• src/hg/lib/straw/cStraw.cpp
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    006f538b5a95fd704a106546add7b6cd9bd77fa3 Sun Jul 19 22:26:32 2026 -0700
    Muting warnings when retrieving hic data for a region not in the hic file, refs #36444
• src/hg/lib/straw/straw.cpp
  • lines changed 1, context: html, text, full: html, text
    006f538b5a95fd704a106546add7b6cd9bd77fa3 Sun Jul 19 22:26:32 2026 -0700
    Muting warnings when retrieving hic data for a region not in the hic file, refs #36444
• src/hg/lib/straw/straw.h
  • lines changed 9, context: html, text, full: html, text
    006f538b5a95fd704a106546add7b6cd9bd77fa3 Sun Jul 19 22:26:32 2026 -0700
    Muting warnings when retrieving hic data for a region not in the hic file, refs #36444
• src/hg/makeDb/doc/ucscGenes/hg19.gencodeV50lift37.sh
  • lines changed 23, context: html, text, full: html, text
    65b9e931d649064e568d5826f636f0ab24d6ac19 Thu Jul 16 07:34:15 2026 -0700
    Makedoc and trackDb for hg19 GENCODE V50 knownGene, refs #37393
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    58972c744024ac33cca07b80375635aff97315f3 Sun Jul 19 21:17:20 2026 -0700
    Noting for knownGene builds that we're not building gnfU95Distance now, as hgNearData isn't listing it as an option. refs #37395, #37393
• src/hg/makeDb/doc/ucscGenes/hg38.gencodeV50.sh
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    f7003f9a6744e9c1d0ec6cef2226a1035d2b2b06 Wed Jul 15 22:08:51 2026 -0700
    TrackDb and makedoc for UCSC Genes version of GENCODE V50, refs #37395
  • lines changed 2, context: html, text, full: html, text
    58972c744024ac33cca07b80375635aff97315f3 Sun Jul 19 21:17:20 2026 -0700
    Noting for knownGene builds that we're not building gnfU95Distance now, as hgNearData isn't listing it as an option. refs #37395, #37393
• src/hg/makeDb/doc/ucscGenes/mm39.gencodeVM39.sh
  • lines changed 53, context: html, text, full: html, text
    10fb7902ebfda7cdddb0b410d506bf2f571b4ec6 Wed Jul 15 21:20:24 2026 -0700
    TrackDb and makedoc for UCSC Genes version of GENCODE VM39, refs #37391
• src/hg/makeDb/trackDb/human/hg19/knownGene.alpha.ra
  • lines changed 46, context: html, text, full: html, text
    65b9e931d649064e568d5826f636f0ab24d6ac19 Thu Jul 16 07:34:15 2026 -0700
    Makedoc and trackDb for hg19 GENCODE V50 knownGene, refs #37393
• src/hg/makeDb/trackDb/human/hg19/knownGeneArchive.ra
  • lines changed 26, context: html, text, full: html, text
    65b9e931d649064e568d5826f636f0ab24d6ac19 Thu Jul 16 07:34:15 2026 -0700
    Makedoc and trackDb for hg19 GENCODE V50 knownGene, refs #37393
• src/hg/makeDb/trackDb/human/hg19/knownGeneV50lift37.html
  • lines changed 167, context: html, text, full: html, text
    65b9e931d649064e568d5826f636f0ab24d6ac19 Thu Jul 16 07:34:15 2026 -0700
    Makedoc and trackDb for hg19 GENCODE V50 knownGene, refs #37393
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    65b9e931d649064e568d5826f636f0ab24d6ac19 Thu Jul 16 07:34:15 2026 -0700
    Makedoc and trackDb for hg19 GENCODE V50 knownGene, refs #37393
• src/hg/makeDb/trackDb/human/hg38/knownGene.alpha.ra
  • lines changed 47, context: html, text, full: html, text
    f7003f9a6744e9c1d0ec6cef2226a1035d2b2b06 Wed Jul 15 22:08:51 2026 -0700
    TrackDb and makedoc for UCSC Genes version of GENCODE V50, refs #37395
• src/hg/makeDb/trackDb/human/hg38/knownGeneArchive.ra
  • lines changed 29, context: html, text, full: html, text
    f7003f9a6744e9c1d0ec6cef2226a1035d2b2b06 Wed Jul 15 22:08:51 2026 -0700
    TrackDb and makedoc for UCSC Genes version of GENCODE V50, refs #37395
• src/hg/makeDb/trackDb/human/hg38/knownGeneV50.html
  • lines changed 168, context: html, text, full: html, text
    f7003f9a6744e9c1d0ec6cef2226a1035d2b2b06 Wed Jul 15 22:08:51 2026 -0700
    TrackDb and makedoc for UCSC Genes version of GENCODE V50, refs #37395
• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
  • lines changed 4, context: html, text, full: html, text
    f7003f9a6744e9c1d0ec6cef2226a1035d2b2b06 Wed Jul 15 22:08:51 2026 -0700
    TrackDb and makedoc for UCSC Genes version of GENCODE V50, refs #37395
  • lines changed 2, context: html, text, full: html, text
    c1e6abaa73026fe77039279711797accf2215a13 Fri Jul 17 13:06:26 2026 -0700
    Removing accidential commit of a trackDb include for a test file, no ticket
• src/hg/makeDb/trackDb/mouse/mm39/knownGene.alpha.ra
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    10fb7902ebfda7cdddb0b410d506bf2f571b4ec6 Wed Jul 15 21:20:24 2026 -0700
    TrackDb and makedoc for UCSC Genes version of GENCODE VM39, refs #37391
• src/hg/makeDb/trackDb/mouse/mm39/knownGeneArchive.ra
  • lines changed 23, context: html, text, full: html, text
    10fb7902ebfda7cdddb0b410d506bf2f571b4ec6 Wed Jul 15 21:20:24 2026 -0700
    TrackDb and makedoc for UCSC Genes version of GENCODE VM39, refs #37391
• src/hg/makeDb/trackDb/mouse/mm39/knownGeneVM39.html
  • lines changed 124, context: html, text, full: html, text
    10fb7902ebfda7cdddb0b410d506bf2f571b4ec6 Wed Jul 15 21:20:24 2026 -0700
    TrackDb and makedoc for UCSC Genes version of GENCODE VM39, refs #37391
• src/hg/makeDb/trackDb/mouse/mm39/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    10fb7902ebfda7cdddb0b410d506bf2f571b4ec6 Wed Jul 15 21:20:24 2026 -0700
    TrackDb and makedoc for UCSC Genes version of GENCODE VM39, refs #37391