332ac49b65ef9faeb07eb993d63424af77973a89
jnavarr5
  Fri Jul 17 14:18:07 2026 -0700
Updating the *.cse.ucsc.edu domain to *.gi.ucsc.edu, refs #37880

diff --git src/hg/htdocs/ENCODE/downloads/index.html src/hg/htdocs/ENCODE/downloads/index.html
index 71ad3b3ca11..50f93d35f52 100644
--- src/hg/htdocs/ENCODE/downloads/index.html
+++ src/hg/htdocs/ENCODE/downloads/index.html
@@ -5,54 +5,54 @@
   <META name="description" content="UCSC Genome Browser Downloads">
   <META name="keywords" content="ENCODE, project, ENCODE project, genome, genome browser, human genome, Blat, UCSC, bioinformatics, gene prediction, SNP, EST, mRNA, NHGRI, NISC, download, downloads">
   <TITLE>UCSC Genome Browser: Downloads</TITLE>
   <LINK REL="STYLESHEET" HREF="../../style/HGStyle.css">
 </HEAD>
 
 <BODY BGCOLOR="FFF9D2" LINK="0000CC" VLINK="#330066" ALINK="#330066">
 <A NAME="TOP"></A>
 
 <!-- Header Images and links -->
 <TABLE BORDER=0 CELLPADDING=0 CELLSPACING=0 WIDTH="100%">
   <TR>
     <TH COLSPAN=2 ALIGN="left">&nbsp;&nbsp;
       <A HREF="http://www.genome.gov/10506161" TARGET=_BLANK><IMG SRC="/images/encodelogo.gif" height=50 ALT="ENCODE Project at NHGRI"></A>
       &nbsp;&nbsp;
-      <A HREF="http://genome-test.cse.ucsc.edu/encode/"><IMG SRC="/images/encode.jpg" ALT="ENCODE Project at UCSC"></A>
+      <A HREF="http://genome-test.gi.ucsc.edu/encode/"><IMG SRC="/images/encode.jpg" ALT="ENCODE Project at UCSC"></A>
     </TH>
   </TR>
 
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     <TH COLSPAN=2 ALIGN="left">
     </TH>
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   <TR>
     <TD COLSPAN=2 HEIGHT=40>
       <TABLE bgcolor="000000" cellpadding="1" cellspacing="1" width="100%" height="27">
         <TR bgcolor="2636D1">
           <TD valign="middle">
 	    <TABLE BORDER=0 CELLSPACING=0 CELLPADDING=0 bgcolor="2636D1" height="24">
 	      <TR>
 	        <TD VALIGN="middle">
 	          <font color="#89A1DE">    &nbsp;
 		    <A class="topbar" HREF="/encode/encode.html"> 
 		     Regions         </a> &nbsp; - &nbsp;
 		    <A class="topbar" HREF="/encode/submission.html">
 		     Data Submission </a> &nbsp; - &nbsp;
-		    <A class="topbar" HREF="http://genome-test.cse.ucsc.edu/encode/downloads/"> 
+		    <A class="topbar" HREF="http://genome-test.gi.ucsc.edu/encode/downloads/"> 
 		     Downloads       </a> &nbsp; - &nbsp;
 		    <A class="topbar" HREF="/cgi-bin/hgLiftOver"> 
 		     Tools           </a> &nbsp; - &nbsp;
 		    <A class="topbar" HREF="/encode/terms.html">
 		     Terms           </a> &nbsp; - &nbsp;
 		    <A class="topbar" HREF="/goldenPath/help/hgTracksHelp.html"> 
 		     Help            </a> &nbsp;
 		  </font>
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         </TR>
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     </TD>
@@ -151,26 +151,26 @@
     <!--outer table is for border purposes-->
     <TABLE WIDTH="100%" BGCOLOR="#888888" BORDER="0" CELLSPACING="0" CELLPADDING="1"><TR><TD>	
         <TABLE BGCOLOR="fffee8" WIDTH="100%"  BORDER="0" CELLSPACING="0" CELLPADDING="0"><TR><TD>	
 	    <TABLE BGCOLOR="D9E4F8" BACKGROUND="/images/hr.gif" WIDTH=100%><TR><TD>
 		<FONT SIZE="4"><b>&nbsp;   Downloads of the Human Genome and
 		Annotations </b></FONT>
 	    </TD></TR></TABLE>
 	    <TABLE BGCOLOR="fffee8" WIDTH="100%" CELLPADDING=0><TR><TH HEIGHT=10></TH></TR>
 	        <TR><TD WIDTH=10>&nbsp;</TD><TD>
                 <FONT SIZE="4">
 		Jul. 2003 (hg16)
                 <UL> 
     	        <LI><A HREF="hg16/regions/">   Nucleotide Sequences</A>
     	        <LI><A HREF="hg16/encodeProteins.fa"> Protein Sequences</A>
                 <LI><A HREF="hg16/liftOver/">  Coordinate conversion files</A>
-                <LI><A HREF="http://hgdownload.cse.ucsc.edu/goldenPath/hg16/encode/">  Annotation database</A>
-                <LI><A HREF="http://genome-test.cse.ucsc.edu/encode/downloads/msa/">Multiple sequence alignments</A>
+                <LI><A HREF="http://hgdownload.gi.ucsc.edu/goldenPath/hg16/encode/">  Annotation database</A>
+                <LI><A HREF="http://hgdownload.gi.ucsc.edu/goldenPath/hg16/encode/alignments/">Multiple sequence alignments</A>
                 </UL>	
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             </TD><TD WIDTH=15></TD></TR></TABLE>
 	</TD></TR></TABLE>
     </TD></TR></TABLE>
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