332ac49b65ef9faeb07eb993d63424af77973a89 jnavarr5 Fri Jul 17 14:18:07 2026 -0700 Updating the *.cse.ucsc.edu domain to *.gi.ucsc.edu, refs #37880 diff --git src/hg/htdocs/ENCODE/downloads/index.html src/hg/htdocs/ENCODE/downloads/index.html index 71ad3b3ca11..50f93d35f52 100644 --- src/hg/htdocs/ENCODE/downloads/index.html +++ src/hg/htdocs/ENCODE/downloads/index.html @@ -1,176 +1,176 @@ <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 3.2//EN"> <HTML> <HEAD> <META HTTP-EQUIV="Content-Type" CONTENT="text/html;CHARSET=iso-8859-1"> <META name="description" content="UCSC Genome Browser Downloads"> <META name="keywords" content="ENCODE, project, ENCODE project, genome, genome browser, human genome, Blat, UCSC, bioinformatics, gene prediction, SNP, EST, mRNA, NHGRI, NISC, download, downloads"> <TITLE>UCSC Genome Browser: Downloads</TITLE> <LINK REL="STYLESHEET" HREF="../../style/HGStyle.css"> </HEAD> <BODY BGCOLOR="FFF9D2" LINK="0000CC" VLINK="#330066" ALINK="#330066"> <A NAME="TOP"></A> <!-- Header Images and links --> <TABLE BORDER=0 CELLPADDING=0 CELLSPACING=0 WIDTH="100%"> <TR> <TH COLSPAN=2 ALIGN="left"> <A HREF="http://www.genome.gov/10506161" TARGET=_BLANK><IMG SRC="/images/encodelogo.gif" height=50 ALT="ENCODE Project at NHGRI"></A> - <A HREF="http://genome-test.cse.ucsc.edu/encode/"><IMG SRC="/images/encode.jpg" ALT="ENCODE Project at UCSC"></A> + <A HREF="http://genome-test.gi.ucsc.edu/encode/"><IMG SRC="/images/encode.jpg" ALT="ENCODE Project at UCSC"></A> </TH> </TR> <!--Hotlinks bar-------------------------------------------------------> <TABLE BORDER=0 WIDTH="100%"> <TR> <TH COLSPAN=2 ALIGN="left"> </TH> </TR> <TR> <TD COLSPAN=2 HEIGHT=40> <TABLE bgcolor="000000" cellpadding="1" cellspacing="1" width="100%" height="27"> <TR bgcolor="2636D1"> <TD valign="middle"> <TABLE BORDER=0 CELLSPACING=0 CELLPADDING=0 bgcolor="2636D1" height="24"> <TR> <TD VALIGN="middle"> <font color="#89A1DE"> <A class="topbar" HREF="/encode/encode.html"> Regions </a> - <A class="topbar" HREF="/encode/submission.html"> Data Submission </a> - - <A class="topbar" HREF="http://genome-test.cse.ucsc.edu/encode/downloads/"> + <A class="topbar" HREF="http://genome-test.gi.ucsc.edu/encode/downloads/"> Downloads </a> - <A class="topbar" HREF="/cgi-bin/hgLiftOver"> Tools </a> - <A class="topbar" HREF="/encode/terms.html"> Terms </a> - <A class="topbar" HREF="/goldenPath/help/hgTracksHelp.html"> Help </a> </font> </TD> </TR> </TABLE> </TD> </TR> </TABLE> </TD> </TR> </TABLE> <!--Downloads menu-------------------------------------------------------> <TABLE BORDER=0 WIDTH="100%"> <TR> <TH COLSPAN=2 ALIGN="left"> </TH> </TR> <TR> <TD CELLPADDING=10> <!--outer table is for border purposes--> <TABLE WIDTH="100%" BGCOLOR="#888888" BORDER="0" CELLSPACING="0" CELLPADDING="1"> <TR> <TD> <TABLE BGCOLOR="fffee8" WIDTH="100%" BORDER="0" CELLSPACING="0" CELLPADDING="0"> <TR> <TD> <TABLE BGCOLOR="D9E4F8" BACKGROUND="/images/hr.gif" WIDTH=100%> <TR> <TD> <FONT SIZE="4"> <b> Sequence and Annotation Downloads</b> </FONT> </TD> </TR> </TABLE> <TABLE BGCOLOR="fffee8" WIDTH="100%" CELLPADDING=0> <TR> <TH HEIGHT=10></TH> </TR> <TR> <TD WIDTH=10> </TD> <TD> This page contains sequence and annotation data downloads. <P> For a description of the format and tables of the annotation databases, refer to the <A HREF="/goldenPath/gbdDescriptions.html"> Description of the annotation database </A> and the <A HREF="/goldenPath/help/hgTracksHelp.html#IndivTracks"> User's Guide</A>. </TD> <TD WIDTH=15></TD> </TR> </TABLE> <br> </TD> </TR> </TABLE> </TD> </TR> </TABLE> </TD> </TR> </TABLE> <!--Terms of Use Table-------------------------------------------------------> <A NAME="terms"></A> <TABLE BORDER=0 WIDTH="100%"><TR><TH COLSPAN=2 ALIGN="left"></TH></TR> <TR><TD CELLPADDING=10> <!--outer table is for border purposes--> <TABLE WIDTH="100%" BGCOLOR="#888888" BORDER="0" CELLSPACING="0" CELLPADDING="1"><TR><TD> <TABLE BGCOLOR="fffee8" WIDTH="100%" BORDER="0" CELLSPACING="0" CELLPADDING="0"><TR><TD> <TABLE BGCOLOR="D9E4F8" BACKGROUND="/images/hr.gif" WIDTH=100%><TR><TD> <FONT SIZE="4"><b> Terms of Use</b></FONT> </TD></TR></TABLE> <TABLE BGCOLOR="fffee8" WIDTH="100%" CELLPADDING=0><TR><TH HEIGHT=10></TH></TR> <TR><TD WIDTH=10> </TD><TD> <P> All of the tables in the Genome Browser are freely usable for any purpose except as indicated in the README.txt files in the download directories. To view restrictions specific to a particular assembly, click on the corresponding download link below and scroll to the bottom of the page. This data was contributed by many researchers, as listed on the Genome Browser <A HREF="../credits.html" TARGET=_blank>credits</A> page. Please acknowledge the contributor(s) of the data you use. <P> Note that specific restrictions on the use of the ENCODE data are in place, and can be accessed <A HREF="../terms.html">here</A>. </TD><TD WIDTH=15></TD></TR></TABLE> <br></TD></TR></TABLE> </TD></TR></TABLE> </TD></TR></TABLE> <!--Human Downloads-------------------------------------------------------> <A NAME="human"></A> <TABLE BORDER=0 WIDTH="100%"><TR><TH COLSPAN=2 ALIGN="left"></TH></TR> <TR><TD CELLPADDING=10> <!--outer table is for border purposes--> <TABLE WIDTH="100%" BGCOLOR="#888888" BORDER="0" CELLSPACING="0" CELLPADDING="1"><TR><TD> <TABLE BGCOLOR="fffee8" WIDTH="100%" BORDER="0" CELLSPACING="0" CELLPADDING="0"><TR><TD> <TABLE BGCOLOR="D9E4F8" BACKGROUND="/images/hr.gif" WIDTH=100%><TR><TD> <FONT SIZE="4"><b> Downloads of the Human Genome and Annotations </b></FONT> </TD></TR></TABLE> <TABLE BGCOLOR="fffee8" WIDTH="100%" CELLPADDING=0><TR><TH HEIGHT=10></TH></TR> <TR><TD WIDTH=10> </TD><TD> <FONT SIZE="4"> Jul. 2003 (hg16) <UL> <LI><A HREF="hg16/regions/"> Nucleotide Sequences</A> <LI><A HREF="hg16/encodeProteins.fa"> Protein Sequences</A> <LI><A HREF="hg16/liftOver/"> Coordinate conversion files</A> - <LI><A HREF="http://hgdownload.cse.ucsc.edu/goldenPath/hg16/encode/"> Annotation database</A> - <LI><A HREF="http://genome-test.cse.ucsc.edu/encode/downloads/msa/">Multiple sequence alignments</A> + <LI><A HREF="http://hgdownload.gi.ucsc.edu/goldenPath/hg16/encode/"> Annotation database</A> + <LI><A HREF="http://hgdownload.gi.ucsc.edu/goldenPath/hg16/encode/alignments/">Multiple sequence alignments</A> </UL> </FONT> </TD><TD WIDTH=15></TD></TR></TABLE> </TD></TR></TABLE> </TD></TR></TABLE> </TD></TR> </TABLE> </BODY></HTML>