d92e36dbbee172d6bb81a751eb8bb935f356890c
max
  Fri Jul 17 09:31:28 2026 -0700
lrSv: add cardSv and noyvertSv to the lrSvAll merged track

#Preview2 week - bugs introduced now will need a build patch to fix
Append NIH CARD 351 (AC/alleleFreq) and Noyvert 888 (AC/AF) to databases.tsv
and re-run lrSvMergeAll.py: 16 source databases now, 3,018,404 input variants
merged to 2,582,278 (was 14 dbs, 2,317,508). Regenerated lrSvAll.ra
(filterValues.sources + sourceCount 1:16) and updated the container summary
table. refs #36258

diff --git src/hg/makeDb/scripts/lrSv/databases.tsv src/hg/makeDb/scripts/lrSv/databases.tsv
index eddde9e315a..a0e381c8c43 100644
--- src/hg/makeDb/scripts/lrSv/databases.tsv
+++ src/hg/makeDb/scripts/lrSv/databases.tsv
@@ -19,15 +19,17 @@
 1000G-ONT-Vienna	1KG ONT Vienna 1,019	/gbdb/hg38/lrSv/1kgOnt.bb	AC	AC			alleleFreq
 1000G-ONT	1KG ONT 100 (Gustafson)	/gbdb/hg38/lrSv/gustafson.bb	sampleCount	samples
 AoU1K	All of Us 1,027 (PacBio)	/gbdb/hg38/lrSv/aou1k.bb	AC	AC			afAfr,afAmr,afEas,afEur,afSas
 Han945	Han Chinese 945	/gbdb/hg38/lrSv/han945.bb	AC	AC			alleleFreq
 TommoJapan	ToMMo 333 (Japanese)	/gbdb/hg38/lrSv/tommoJp.bb	AC	AC			alleleFreq
 GA4K	GA4K 502 (rare disease)	/gbdb/hg38/lrSv/ga4kSv.bb	AC	AC			alleleFreq
 deCODE	deCODE 3,622 (Icelandic)	/gbdb/hg38/lrSv/decodeSv.bb	UNKNOWN	AC
 HPRCv2.1	HPRC v2.1 233	/gbdb/hg38/lrSv/hprc2v21.bb	AC	AC			alleleFreq
 HGSVC2	HGSVC2 32	/gbdb/hg38/lrSv/hgsvc2.bb	AC	AC
 HGSVC3	HGSVC3 65	/gbdb/hg38/lrSv/hgsvc3.bb	AC	AC
 # KimPD (Kim PD Brain 100) is held on dev/alpha until published; it has
 # breakend artifacts up to 190 Mb, so it is excluded from the lrSvAll merge.
 ArabUAE53	Arab APR 53	/gbdb/hg38/lrSv/apr.bb	AC	AC			alleleFreq
 China58	CPC 58 (Chinese)	/gbdb/hg38/lrSv/cpc1.bb	AC	AC			alleleFreq
 Svatalog101	SVatalog 101	/gbdb/hg38/lrSv/chirmade101.bb	UNKNOWN	AC
+CARD	NIH CARD 351 (brain)	/gbdb/hg38/lrSv/card.bb	AC	AC			alleleFreq
+Noyvert888	Noyvert 888 (1000G ONT)	/gbdb/hg38/lrSv/noyvert.bb	AC	AC			AF