12c38f63e39d562ab77060346429068f97e32c25
max
  Fri Jul 17 23:59:34 2026 -0700
lrsv docs change after feedback from Jonas Gustavsson jgust1@uw.edu

diff --git src/hg/makeDb/trackDb/human/lrSv.html src/hg/makeDb/trackDb/human/lrSv.html
index 36e798ac49d..e1873d4fbb0 100644
--- src/hg/makeDb/trackDb/human/lrSv.html
+++ src/hg/makeDb/trackDb/human/lrSv.html
@@ -243,43 +243,42 @@
 </p>
 
 <h3><a href="hgTrackUi?g=han945Sv">Han 945 SVs</a></h3>
 <p>
 Structural variants from 945 Han Chinese individuals. ~111k SVs
 (deletions, insertions, duplications, inversions, translocations) merged with SURVIVOR.
 Includes allele frequencies and per-sample support.
 </p>
 
 <h3><a href="hgTrackUi?g=gustafsonSv">1KG ONT 100 SVs</a></h3>
 <p>
 Structural variants from Oxford Nanopore long-read sequencing of 100
 1000 Genomes samples (5 superpopulations, 19 subpopulations) released
 by the 1000 Genomes ONT Sequencing Consortium and described in
 Gustafson et al. 2024. ~114k SVs (insertions, deletions, duplications,
-inversions) called with five callers and merged with Jasmine. This is a
-separate dataset from the Vienna 1KG-ONT release below; the 100 samples
-here do not overlap with the 1,019 samples in the Vienna release.
+inversions) called with five callers and merged with Jasmine. This is mostly a
+separate dataset from the Vienna 1KG-ONT release described next (directly below);
+only two samples (HG03499 and HG03548) overlap.
 </p>
 
 <h3><a href="hgTrackUi?g=lrSv1kgOnt">1KG ONT Vienna SVs</a></h3>
 <p>
 Structural variants from 1,019 individuals across 26 populations (1000 Genomes ONT).
 ~161k SVs annotated with SVAN, classifying insertions and deletions by mechanism
 of origin (mobile elements, VNTRs, processed pseudogenes, etc.).
 Original coordinates are on T2T-CHM13 (hs1); the hg38 version was created via liftOver.
-This is a separate dataset from the 1KG ONT 100 (Gustafson et al.) track above;
-the 1,019 samples here do not overlap with the 100 samples in that release.
+Two samples (HG03499 and HG03548) overlap with the 1KG ONT 100 dataset.
 </p>
 
 <h3><a href="hgTrackUi?g=tommoJpSv">ToMMo Japanese SVs</a></h3>
 <p>
 Structural variants from 333 Japanese individuals (111 trios) from the Tohoku Medical
 Megabank (ToMMo). ~74k SVs (deletions and insertions) with trio-based Mendelian
 error rates and allele frequencies.
 </p>
 
 <h3><a href="hgTrackUi?g=aou1kSv">AoU 1K SVs</a></h3>
 <p>
 Structural variants from 1,027 individuals from the All of Us (AoU) Research Program,
 sequenced with PacBio HiFi long reads. AoU is a deeply phenotyped biobank
 that includes participants with a range of conditions (e.g. diabetes,
 hearing loss, hypertension), so the cohort is not disease-free.