d92e36dbbee172d6bb81a751eb8bb935f356890c max Fri Jul 17 09:31:28 2026 -0700 lrSv: add cardSv and noyvertSv to the lrSvAll merged track #Preview2 week - bugs introduced now will need a build patch to fix Append NIH CARD 351 (AC/alleleFreq) and Noyvert 888 (AC/AF) to databases.tsv and re-run lrSvMergeAll.py: 16 source databases now, 3,018,404 input variants merged to 2,582,278 (was 14 dbs, 2,317,508). Regenerated lrSvAll.ra (filterValues.sources + sourceCount 1:16) and updated the container summary table. refs #36258 diff --git src/hg/makeDb/trackDb/human/lrSv.html src/hg/makeDb/trackDb/human/lrSv.html index a9ff3beb234..36e798ac49d 100644 --- src/hg/makeDb/trackDb/human/lrSv.html +++ src/hg/makeDb/trackDb/human/lrSv.html @@ -33,33 +33,33 @@ <th>N samples</th> <th>Cohort / disease</th> <th>Disease cases</th> <th>Coverage</th> <th>SV count</th> <th>Min</th> <th>Median</th> <th>Max</th> </tr> <tr> <td><a href="hgTrackUi?g=lrSvAll"><b>All merged</b></a></td> <td>—</td> <td>All long-read SV datasets merged on identical position+type+length, with per-database AC</td> <td>mixed</td> <td>mixed (PacBio HiFi, ONT)</td> - <td>2,317,508</td> + <td>2,582,278</td> + <td>1</td> <td>1</td> - <td>147</td> <td>57,207,413</td> </tr> <tr> <td><a href="hgTrackUi?g=colorsDbSv">CoLoRSdb</a></td> <td>1,427</td> <td>Consortium of Long-Read Sequencing, joint callset</td> <td>No</td> <td>mixed (HiFi)</td> <td>426,239</td> <td>20</td> <td>33</td> <td>101,381</td> </tr> <tr> <td><a href="hgTrackUi?g=han945Sv">Han 945</a></td>