9a63ecfed718d4ad0b2c5212c7ad8844c9d23531 lrnassar Mon Jun 29 14:21:07 2026 -0700 lrSv: add GitHub source links (makedoc, scripts, trackDb.ra) to all description pages. refs #36258 Per the updated qa-track standard, link the track's UCSC source artifacts on github.com/ucscGenomeBrowser/kent from every lrSv description page: - Add the missing links to the lrSv supertrack page and colorsDbSv. - Backfill the trackDb.ra link (third artifact) across the subtrack pages that already linked the makedoc + scripts dir. lrSv1kLin is left as its placeholder (staged, not released). diff --git src/hg/makeDb/trackDb/human/aprSv.html src/hg/makeDb/trackDb/human/aprSv.html index 283e82d44b8..f532ab2a818 100644 --- src/hg/makeDb/trackDb/human/aprSv.html +++ src/hg/makeDb/trackDb/human/aprSv.html @@ -70,31 +70,31 @@ <p> The source APR VCF was downloaded from the Mohammed Bin Rashid University SharePoint page, <a href="https://www.mbru.ac.ae/the-arab-pangenome-reference/" target="_blank"> mbru.ac.ae/the-arab-pangenome-reference</a>; the accompanying project source code is at <a href="https://github.com/muddinmbru/arab_pangenome_reference" target="_blank"> github.com/muddinmbru/arab_pangenome_reference</a>.</p> <p> The step-by-step build commands (download, graph-VCF conversion, liftOver, bigBed build) are recorded in the UCSC makeDoc for this track container: <a href="https://github.com/ucscGenomeBrowser/kent/blob/master/src/hg/makeDb/doc/hg38/lrSv.txt" target="_blank"> doc/hg38/lrSv.txt</a>. The conversion scripts and autoSql schemas live in <a href="https://github.com/ucscGenomeBrowser/kent/tree/master/src/hg/makeDb/scripts/lrSv" target="_blank"> -makeDb/scripts/lrSv</a>. +makeDb/scripts/lrSv</a>, and the track configuration is in <a href="https://github.com/ucscGenomeBrowser/kent/blob/master/src/hg/makeDb/trackDb/human/lrSv.ra" target="_blank">trackDb/human/lrSv.ra</a>. </p> <h2>Data Access</h2> <p>The data can be explored interactively with the <a href="../cgi-bin/hgTables">Table Browser</a> or <a href="../cgi-bin/hgIntegrator">Data Integrator</a>, and accessed from scripts via our <a href="https://api.genome.ucsc.edu">API</a> (track=<i>aprSv</i>).</p> <p>For automated download, the bigBed files are at <a href="http://hgdownload.soe.ucsc.edu/gbdb/hs1/lrSv/apr.bb" target="_blank"> http://hgdownload.soe.ucsc.edu/gbdb/hs1/lrSv/apr.bb</a> (native) and <a href="http://hgdownload.soe.ucsc.edu/gbdb/hg38/lrSv/apr.bb" target="_blank"> http://hgdownload.soe.ucsc.edu/gbdb/hg38/lrSv/apr.bb</a> (lifted).</p>