9a63ecfed718d4ad0b2c5212c7ad8844c9d23531 lrnassar Mon Jun 29 14:21:07 2026 -0700 lrSv: add GitHub source links (makedoc, scripts, trackDb.ra) to all description pages. refs #36258 Per the updated qa-track standard, link the track's UCSC source artifacts on github.com/ucscGenomeBrowser/kent from every lrSv description page: - Add the missing links to the lrSv supertrack page and colorsDbSv. - Backfill the trackDb.ra link (third artifact) across the subtrack pages that already linked the makedoc + scripts dir. lrSv1kLin is left as its placeholder (staged, not released). diff --git src/hg/makeDb/trackDb/human/chirmade101Sv.html src/hg/makeDb/trackDb/human/chirmade101Sv.html index dc35b075c66..5f9b2a575e6 100644 --- src/hg/makeDb/trackDb/human/chirmade101Sv.html +++ src/hg/makeDb/trackDb/human/chirmade101Sv.html @@ -62,31 +62,31 @@
The annotation TSV sv_annotations.tsv was downloaded from the Zenodo companion record, zenodo.org/records/13367574. Coordinates in the TSV are 1-based closed and were converted to 0-based half-open BED for this track.
The step-by-step build commands (download, coordinate shift, format conversion, bigBed build) are recorded in the UCSC makeDoc for this track container: doc/hg38/lrSv.txt. The conversion scripts and autoSql schemas live in -makeDb/scripts/lrSv. +makeDb/scripts/lrSv, and the track configuration is in trackDb/human/lrSv.ra.
The data can be explored interactively in table format with the Table Browser or the Data Integrator, and accessed programmatically through our API, track=chirmade101Sv.
The bigBed is available from our download server as chirmade101.bb. Example: bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/lrSv/chirmade101.bb -chrom=chr21 -start=0 -end=100000000 stdout.