9a63ecfed718d4ad0b2c5212c7ad8844c9d23531 lrnassar Mon Jun 29 14:21:07 2026 -0700 lrSv: add GitHub source links (makedoc, scripts, trackDb.ra) to all description pages. refs #36258 Per the updated qa-track standard, link the track's UCSC source artifacts on github.com/ucscGenomeBrowser/kent from every lrSv description page: - Add the missing links to the lrSv supertrack page and colorsDbSv. - Backfill the trackDb.ra link (third artifact) across the subtrack pages that already linked the makedoc + scripts dir. lrSv1kLin is left as its placeholder (staged, not released). diff --git src/hg/makeDb/trackDb/human/cpc1Sv.html src/hg/makeDb/trackDb/human/cpc1Sv.html index d4d9ec3d216..293a24cf355 100644 --- src/hg/makeDb/trackDb/human/cpc1Sv.html +++ src/hg/makeDb/trackDb/human/cpc1Sv.html @@ -97,31 +97,31 @@ is lifted with the UCSC hs1ToHg38.over.chain.gz chain (36,030 sites, 10,062 did not lift).
The source VCF is distributed by the Chinese-Pangenome-Consortium-Phase-I GitHub repository.
The step-by-step build commands (CPC-only recount, liftOver, snarl collapse, bigBed build) are recorded in the UCSC makeDoc for this track container: doc/hg38/lrSv.txt. The conversion scripts and autoSql schemas live in -makeDb/scripts/lrSv. +makeDb/scripts/lrSv, and the track configuration is in trackDb/human/lrSv.ra.
The data can be explored interactively with the Table Browser or Data Integrator, and accessed from scripts via our API (track=cpc1Sv).
For automated download, the bigBed files are at http://hgdownload.soe.ucsc.edu/gbdb/hs1/lrSv/cpc1.bb (native) and http://hgdownload.soe.ucsc.edu/gbdb/hg38/lrSv/cpc1.bb (lifted).