9a63ecfed718d4ad0b2c5212c7ad8844c9d23531 lrnassar Mon Jun 29 14:21:07 2026 -0700 lrSv: add GitHub source links (makedoc, scripts, trackDb.ra) to all description pages. refs #36258 Per the updated qa-track standard, link the track's UCSC source artifacts on github.com/ucscGenomeBrowser/kent from every lrSv description page: - Add the missing links to the lrSv supertrack page and colorsDbSv. - Backfill the trackDb.ra link (third artifact) across the subtrack pages that already linked the makedoc + scripts dir. lrSv1kLin is left as its placeholder (staged, not released). diff --git src/hg/makeDb/trackDb/human/decodeSv.html src/hg/makeDb/trackDb/human/decodeSv.html index 21dddbcebb1..4d3be32437c 100644 --- src/hg/makeDb/trackDb/human/decodeSv.html +++ src/hg/makeDb/trackDb/human/decodeSv.html @@ -53,31 +53,31 @@ The release is site-only (no per-sample genotypes or allele frequencies), so the track cannot be filtered by AF/AC.
The VCF ont_sv_high_confidence_SVs.sorted.vcf.gz was downloaded from the deCODE genetics LRS_SV_sets GitHub repository.
The step-by-step build commands (download, format conversion, bigBed build) are recorded in the UCSC makeDoc for this track container: doc/hg38/lrSv.txt. The conversion scripts and autoSql schemas live in -makeDb/scripts/lrSv. +makeDb/scripts/lrSv, and the track configuration is in trackDb/human/lrSv.ra.
The data can be explored interactively in table format with the Table Browser or the Data Integrator and exported from there to spreadsheet or tab-sep tables. From scripts, the data can be accessed through our API, track=decodeSv.
The annotation is stored as a bigBed file that can be downloaded from our download server as decodeSv.bb. Individual regions or the whole annotation can be obtained with the bigBedToBed utility, available