fcb3dd044df301a3c0ea4588e1debf7068b00333
lrnassar
  Mon Jun 29 15:43:06 2026 -0700
lrSv: fresh-eyes audit fixes + multi-line HTML mouseOvers on all subtracks. refs #36258

Audit fixes:
- lrSv.html summary table: recompute the per-dataset min/median/max SV-length
columns from current data (length = max(svLen,insLen)); the old values came
from the .ra filter bounds and were off by one in several rows. Fixes the
stale lrSvAll Max (190,088,223 -> 57,207,413, left over from before KimPD was
dropped from the merge) and the APR row's length convention.
- decodeSv.html: align the opening Description to the displayed (deduped) counts
(119,453 / 41,216 DEL) instead of the upstream release counts, noting the
dedup from the 133,886-record release.
- Drop dead svType filter options (CNV/BND/MEI/CTX) that appear in no subtrack,
from the lrSv supertrack filterValues.svType and from lrSvAll (both the
generated lrSvAll.ra and the lrSvMergeAll.py generator).

Reformat the mouseOver of all 16 subtracks to the same multi-line bold-label
HTML style as lrSvAll (Var / SV len / Ins len / per-track fields), using each
track's existing fields.

diff --git src/hg/makeDb/trackDb/human/decodeSv.html src/hg/makeDb/trackDb/human/decodeSv.html
index 4d3be32437c..159b653e4ea 100644
--- src/hg/makeDb/trackDb/human/decodeSv.html
+++ src/hg/makeDb/trackDb/human/decodeSv.html
@@ -1,22 +1,23 @@
 <h2>Description</h2>
 <p>
 This track shows high-confidence structural variants (SVs) identified by
 Oxford Nanopore long-read sequencing of 3,622 Icelanders recruited through
-the deCODE genetics population cohort. The release contains 133,886 SVs
-(55,649 deletions, 75,050 insertions and 3,187 combined insertion/deletion
-events). Variants are site-level (no per-sample genotypes) and have been
+the deCODE genetics population cohort. The track contains 119,453 high-confidence
+SVs (41,216 deletions, 75,050 insertions and 3,187 combined insertion/deletion
+events), deduplicated from a 133,886-record upstream release. Variants are
+site-level (no per-sample genotypes) and have been
 filtered to a high-confidence subset validated in the accompanying
 population-scale analysis.
 </p>
 <p>
 Note that this release does not include allele counts or allele frequencies:
 each row represents a site that was called with high confidence in the
 cohort, but the number of carrier samples is not provided, so the track
 cannot be filtered by AF/AC.
 </p>
 
 <h2>Display Conventions and Configuration</h2>
 <p>
 Items are colored by SV type:
 <ul>
 <li><span style="color: rgb(200,0,0);">Deletions (DEL)</span> - red</li>