9a63ecfed718d4ad0b2c5212c7ad8844c9d23531 lrnassar Mon Jun 29 14:21:07 2026 -0700 lrSv: add GitHub source links (makedoc, scripts, trackDb.ra) to all description pages. refs #36258 Per the updated qa-track standard, link the track's UCSC source artifacts on github.com/ucscGenomeBrowser/kent from every lrSv description page: - Add the missing links to the lrSv supertrack page and colorsDbSv. - Backfill the trackDb.ra link (third artifact) across the subtrack pages that already linked the makedoc + scripts dir. lrSv1kLin is left as its placeholder (staged, not released). diff --git src/hg/makeDb/trackDb/human/ga4kSv.html src/hg/makeDb/trackDb/human/ga4kSv.html index 1f6ef9d049e..32bf358d186 100644 --- src/hg/makeDb/trackDb/human/ga4kSv.html +++ src/hg/makeDb/trackDb/human/ga4kSv.html @@ -54,31 +54,31 @@ (SVN) and allele frequencies (SVF = SVC/SVN).

The source VCF was cloned from the Children's Mercy Research Institute GA4K GitHub repository, github.com/ChildrensMercyResearchInstitute/GA4K (pacbio_sv_vcf/pb_joint_merged.sv.vcf.gz).

The step-by-step build commands (download, format conversion, bigBed build) are recorded in the UCSC makeDoc for this track container: doc/hg38/lrSv.txt. The conversion scripts and autoSql schemas live in -makeDb/scripts/lrSv. +makeDb/scripts/lrSv, and the track configuration is in trackDb/human/lrSv.ra.

Data Access

The data can be explored interactively in table format with the Table Browser or the Data Integrator and exported from there to spreadsheet or tab-sep tables. From scripts, the data can be accessed through our API, track=ga4kSv.

For automated download and analysis, the annotation is stored in a bigBed file that can be downloaded from our download server. The file for this track is called ga4kSv.bb.