9a63ecfed718d4ad0b2c5212c7ad8844c9d23531 lrnassar Mon Jun 29 14:21:07 2026 -0700 lrSv: add GitHub source links (makedoc, scripts, trackDb.ra) to all description pages. refs #36258 Per the updated qa-track standard, link the track's UCSC source artifacts on github.com/ucscGenomeBrowser/kent from every lrSv description page: - Add the missing links to the lrSv supertrack page and colorsDbSv. - Backfill the trackDb.ra link (third artifact) across the subtrack pages that already linked the makedoc + scripts dir. lrSv1kLin is left as its placeholder (staged, not released). diff --git src/hg/makeDb/trackDb/human/han945Sv.html src/hg/makeDb/trackDb/human/han945Sv.html index a719ff0018a..00a85165dab 100644 --- src/hg/makeDb/trackDb/human/han945Sv.html +++ src/hg/makeDb/trackDb/human/han945Sv.html @@ -40,31 +40,31 @@ 42,300 insertions, 13,503 duplications, 5,595 inversions and 372 translocations.
The site-only VCF released at OMIX accession OED00945268 (OED00945268_Han_945samples_SV.vcf.gz) was converted to BED for this track.
The step-by-step build commands (download, format conversion, bigBed build) are recorded in the UCSC makeDoc for this track container: doc/hg38/lrSv.txt. The conversion scripts and autoSql schemas live in -makeDb/scripts/lrSv. +makeDb/scripts/lrSv, and the track configuration is in trackDb/human/lrSv.ra.
The raw VCF data was obtained from the OMIX repository (accession OED00945268) at the National Genomics Data Center (NGDC), China National Center for Bioinformation.
The source VCF also encodes phased per-sample genotypes: the sampleList field on the detail page is derived from the SURVIVOR SUPP_VEC bitmask and is an ordered list of the 1-based indices of the 945 samples carrying each SV. The full per-sample phased VCF can be browsed as a separate track in the SVs from 945 Han Chinese entry of