9a63ecfed718d4ad0b2c5212c7ad8844c9d23531 lrnassar Mon Jun 29 14:21:07 2026 -0700 lrSv: add GitHub source links (makedoc, scripts, trackDb.ra) to all description pages. refs #36258 Per the updated qa-track standard, link the track's UCSC source artifacts on github.com/ucscGenomeBrowser/kent from every lrSv description page: - Add the missing links to the lrSv supertrack page and colorsDbSv. - Backfill the trackDb.ra link (third artifact) across the subtrack pages that already linked the makedoc + scripts dir. lrSv1kLin is left as its placeholder (staged, not released). diff --git src/hg/makeDb/trackDb/human/hgsvc3Sv.html src/hg/makeDb/trackDb/human/hgsvc3Sv.html index 442f931adef..381979c359b 100644 --- src/hg/makeDb/trackDb/human/hgsvc3Sv.html +++ src/hg/makeDb/trackDb/human/hgsvc3Sv.html @@ -92,31 +92,31 @@ variants_T2T-CHM13_sv_insdel_HGSVC2024v1.0.tsv.gz and variants_T2T-CHM13_sv_inv_HGSVC2024v1.0.tsv.gz tables from the HGSVC3 T2T-CHM13 release directory; no liftOver is involved on hs1. Type-specific columns (HOM_REF/HOM_TIG/TE for insdel; RGN_REF_INNER for inversions) are empty on the detail page when they do not apply.
The step-by-step build commands (download, format conversion, bigBed build) are recorded in the UCSC makeDoc for this track container: doc/hg38/lrSv.txt and doc/hs1/lrSv.txt. The conversion scripts and autoSql schemas live in -makeDb/scripts/lrSv. +makeDb/scripts/lrSv, and the track configuration is in trackDb/human/lrSv.ra.
The data can be explored interactively in table format with the Table Browser or the Data Integrator, and accessed programmatically through our API, track=hgsvc3Sv.
The bigBed is available from our download server for both assemblies: