9a63ecfed718d4ad0b2c5212c7ad8844c9d23531 lrnassar Mon Jun 29 14:21:07 2026 -0700 lrSv: add GitHub source links (makedoc, scripts, trackDb.ra) to all description pages. refs #36258 Per the updated qa-track standard, link the track's UCSC source artifacts on github.com/ucscGenomeBrowser/kent from every lrSv description page: - Add the missing links to the lrSv supertrack page and colorsDbSv. - Backfill the trackDb.ra link (third artifact) across the subtrack pages that already linked the makedoc + scripts dir. lrSv1kLin is left as its placeholder (staged, not released). diff --git src/hg/makeDb/trackDb/human/hgsvc3Sv.html src/hg/makeDb/trackDb/human/hgsvc3Sv.html index 442f931adef..381979c359b 100644 --- src/hg/makeDb/trackDb/human/hgsvc3Sv.html +++ src/hg/makeDb/trackDb/human/hgsvc3Sv.html @@ -92,31 +92,31 @@ <tt>variants_T2T-CHM13_sv_insdel_HGSVC2024v1.0.tsv.gz</tt> and <tt>variants_T2T-CHM13_sv_inv_HGSVC2024v1.0.tsv.gz</tt> tables from the <a href="https://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/HGSVC3/release/Variant_Calls/1.0/T2T-CHM13/annotation_table/" target="_blank"> HGSVC3 T2T-CHM13 release directory</a>; no liftOver is involved on hs1. Type-specific columns (HOM_REF/HOM_TIG/TE for insdel; RGN_REF_INNER for inversions) are empty on the detail page when they do not apply. </p> <p> The step-by-step build commands (download, format conversion, bigBed build) are recorded in the UCSC makeDoc for this track container: <a href="https://github.com/ucscGenomeBrowser/kent/blob/master/src/hg/makeDb/doc/hg38/lrSv.txt" target="_blank"> doc/hg38/lrSv.txt</a> and <a href="https://github.com/ucscGenomeBrowser/kent/blob/master/src/hg/makeDb/doc/hs1/lrSv.txt" target="_blank"> doc/hs1/lrSv.txt</a>. The conversion scripts and autoSql schemas live in <a href="https://github.com/ucscGenomeBrowser/kent/tree/master/src/hg/makeDb/scripts/lrSv" target="_blank"> -makeDb/scripts/lrSv</a>. +makeDb/scripts/lrSv</a>, and the track configuration is in <a href="https://github.com/ucscGenomeBrowser/kent/blob/master/src/hg/makeDb/trackDb/human/lrSv.ra" target="_blank">trackDb/human/lrSv.ra</a>. </p> <h2>Data Access</h2> <p> The data can be explored interactively in table format with the <a href="../cgi-bin/hgTables">Table Browser</a> or the <a href="../cgi-bin/hgIntegrator">Data Integrator</a>, and accessed programmatically through our <a href="https://api.genome.ucsc.edu">API</a>, track=<i>hgsvc3Sv</i>. </p> <p> The bigBed is available from our download server for both assemblies: <ul> <li>GRCh38: <a href="http://hgdownload.soe.ucsc.edu/gbdb/hg38/lrSv/hgsvc3.bb" target="_blank">