9a63ecfed718d4ad0b2c5212c7ad8844c9d23531
lrnassar
  Mon Jun 29 14:21:07 2026 -0700
lrSv: add GitHub source links (makedoc, scripts, trackDb.ra) to all description pages. refs #36258

Per the updated qa-track standard, link the track's UCSC source artifacts on
github.com/ucscGenomeBrowser/kent from every lrSv description page:
- Add the missing links to the lrSv supertrack page and colorsDbSv.
- Backfill the trackDb.ra link (third artifact) across the subtrack pages that
already linked the makedoc + scripts dir.
lrSv1kLin is left as its placeholder (staged, not released).

diff --git src/hg/makeDb/trackDb/human/lrSv.html src/hg/makeDb/trackDb/human/lrSv.html
index e55ac8a085f..9d69f9b1e9c 100644
--- src/hg/makeDb/trackDb/human/lrSv.html
+++ src/hg/makeDb/trackDb/human/lrSv.html
@@ -338,31 +338,38 @@
 alongside the GWAS SVatalog tool (Chirmade et al. 2026). The samples come
 from the CF Canada-Sick Kids Program in Individual CF Therapy (CFIT), a
 cystic-fibrosis (CF) patient cohort assembled to model patient-specific
 responses to CFTR modulator therapies (most participants are F508del
 homozygotes or F508del / minimal-function compound heterozygotes; a smaller
 number carry rare nonsense or missense CFTR mutations). ~87k SVs
 (deletions, insertions, duplications, inversions and complex events)
 annotated with gene overlaps, ClinGen / gnomAD constraint scores,
 OMIM / ClinVar / DGV / Decipher regional annotations.
 </p>
 
 
 <h2>Data Access</h2>
 <p>
 Each subtrack has its own documentation page with details on how to download
-and intersect the underlying annotations.
+and intersect the underlying annotations. The build process for all subtracks
+is recorded in the UCSC makeDoc,
+<a href="https://github.com/ucscGenomeBrowser/kent/blob/master/src/hg/makeDb/doc/hg38/lrSv.txt" target="_blank">doc/hg38/lrSv.txt</a>
+(and <a href="https://github.com/ucscGenomeBrowser/kent/blob/master/src/hg/makeDb/doc/hs1/lrSv.txt" target="_blank">doc/hs1/lrSv.txt</a>
+for T2T-CHM13); the conversion scripts are in
+<a href="https://github.com/ucscGenomeBrowser/kent/tree/master/src/hg/makeDb/scripts/lrSv" target="_blank">makeDb/scripts/lrSv</a>,
+and the track configuration is in
+<a href="https://github.com/ucscGenomeBrowser/kent/blob/master/src/hg/makeDb/trackDb/human/lrSv.ra" target="_blank">trackDb/human/lrSv.ra</a>.
 </p>
 
 <h2>References</h2>
 
 <p>
 Gong J, Sun H, Wang K, Zhao Y, Huang Y, Chen Q, Qiao H, Gao Y, Zhao J, Ling Y <em>et al</em>.
 <a href="https://doi.org/10.1038/s41467-025-56661-9" target="_blank">
 Long-read sequencing of 945 Han individuals identifies structural variants associated with
 phenotypic diversity and disease susceptibility</a>.
 <em>Nat Commun</em>. 2025 Feb 10;16(1):1494.
 PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/39929826" target="_blank">39929826</a>; PMC: <a
 href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11811171/" target="_blank">PMC11811171</a>
 </p>
 
 <p>