9a63ecfed718d4ad0b2c5212c7ad8844c9d23531 lrnassar Mon Jun 29 14:21:07 2026 -0700 lrSv: add GitHub source links (makedoc, scripts, trackDb.ra) to all description pages. refs #36258 Per the updated qa-track standard, link the track's UCSC source artifacts on github.com/ucscGenomeBrowser/kent from every lrSv description page: - Add the missing links to the lrSv supertrack page and colorsDbSv. - Backfill the trackDb.ra link (third artifact) across the subtrack pages that already linked the makedoc + scripts dir. lrSv1kLin is left as its placeholder (staged, not released). diff --git src/hg/makeDb/trackDb/human/lrSv1kgOnt.html src/hg/makeDb/trackDb/human/lrSv1kgOnt.html index fa8be24c6ae..1f0600eecfd 100644 --- src/hg/makeDb/trackDb/human/lrSv1kgOnt.html +++ src/hg/makeDb/trackDb/human/lrSv1kgOnt.html @@ -76,31 +76,31 @@

The SVAN-annotated unphased VCF (final-vcf.unphased.SVAN_1.3.vcf.gz) was downloaded from the IGSR 1KG_ONT_VIENNA v1.1 SVAN-annotation directory; allele counts were added from the companion shapeit5-phased-callset (shapeit5-phased-callset_final-vcf.phased.vcf.gz) in the same release tree.

The step-by-step build commands (download, liftOver, format conversion, bigBed build) are recorded in the UCSC makeDoc for this track container: doc/hg38/lrSv.txt. The conversion scripts and autoSql schemas live in -makeDb/scripts/lrSv. +makeDb/scripts/lrSv, and the track configuration is in trackDb/human/lrSv.ra.

Data Access

Source data is available from the 1000 Genomes ONT Vienna data collection at IGSR.

Credits

Thanks to the 1000 Genomes ONT Vienna consortium for making their structural variant calls and SVAN annotations publicly available.