9a63ecfed718d4ad0b2c5212c7ad8844c9d23531 lrnassar Mon Jun 29 14:21:07 2026 -0700 lrSv: add GitHub source links (makedoc, scripts, trackDb.ra) to all description pages. refs #36258 Per the updated qa-track standard, link the track's UCSC source artifacts on github.com/ucscGenomeBrowser/kent from every lrSv description page: - Add the missing links to the lrSv supertrack page and colorsDbSv. - Backfill the trackDb.ra link (third artifact) across the subtrack pages that already linked the makedoc + scripts dir. lrSv1kLin is left as its placeholder (staged, not released). diff --git src/hg/makeDb/trackDb/human/tommoJpSv.html src/hg/makeDb/trackDb/human/tommoJpSv.html index cd8af7be4f9..33d7078a571 100644 --- src/hg/makeDb/trackDb/human/tommoJpSv.html +++ src/hg/makeDb/trackDb/human/tommoJpSv.html @@ -58,31 +58,31 @@ trio families; allele frequencies in this track are computed from the 222 unrelated parents to avoid double-counting. </p> <p> The site-only VCF <tt>tommo-JSV1-20211208-GRCh38-without-genotype-count.vcf.gz</tt> was downloaded from the jMorp JSV1 download page, <a href="https://jmorp.megabank.tohoku.ac.jp/downloads/tommo-jsv1-20211208-af" target="_blank"> tommo-jsv1-20211208-af</a>. </p> <p> The step-by-step build commands (download, format conversion, bigBed build) are recorded in the UCSC makeDoc for this track container: <a href="https://github.com/ucscGenomeBrowser/kent/blob/master/src/hg/makeDb/doc/hg38/lrSv.txt" target="_blank"> doc/hg38/lrSv.txt</a>. The conversion scripts and autoSql schemas live in <a href="https://github.com/ucscGenomeBrowser/kent/tree/master/src/hg/makeDb/scripts/lrSv" target="_blank"> -makeDb/scripts/lrSv</a>. +makeDb/scripts/lrSv</a>, and the track configuration is in <a href="https://github.com/ucscGenomeBrowser/kent/blob/master/src/hg/makeDb/trackDb/human/lrSv.ra" target="_blank">trackDb/human/lrSv.ra</a>. </p> <h2>Data Access</h2> <p> Source data is available from the <a href="https://jmorp.megabank.tohoku.ac.jp/downloads/tommo-jsv1-20211208-af" target="_blank">tommo-jsv1-20211208-af download page</a> on the jMorp portal (ToMMo Japanese Multi Omics Reference Panel). </p> <h2>Conditions of Use</h2> <p> The information in the ToMMo jMorp database is provided only to persons who agree to jMorp's <a href="https://jmorp.megabank.tohoku.ac.jp/help/conditions-of-use" target="_blank">