aaead1eeb6e454442e1a6c6dcb6a7c41cf3991d6
lrnassar
Tue Jun 30 16:49:27 2026 -0700
varFreqs: July 1, 2026 release announcement, newsarch + indexNews + pennantIcon. refs #36642
Adds the New SNV Frequencies supertrack release entry to newsarch.html
(anchor #070126) and indexNews.html for the upcoming July 1, 2026 release.
The newsarch entry features rs4986893, the CYP2C19 East Asian founder
stop-gained variant, as the screenshot example. Updates the varFreqs
supertrack pennantIcon to point to the new anchor with hover text
"Released Jul. 1, 2026".
diff --git src/hg/makeDb/trackDb/human/varFreqs.ra src/hg/makeDb/trackDb/human/varFreqs.ra
index bd38b65f641..c9d117642e9 100644
--- src/hg/makeDb/trackDb/human/varFreqs.ra
+++ src/hg/makeDb/trackDb/human/varFreqs.ra
@@ -1,23 +1,23 @@
track varFreqs
shortLabel SNV Frequencies
longLabel SNV Frequencies from various cohorts or national projects
group varRep
type bed 12
visibility hide
superTrack on
-pennantIcon New red ../goldenPath/newsarch.html#TBD "Released TBD"
+pennantIcon New red ../goldenPath/newsarch.html#070126 "Released Jul. 1, 2026"
track varFreqsAffected
shortLabel Disease cohorts
longLabel SNV Frequencies: variants in ~130,000 affected or case individuals (autism, schizophrenia, rare disease cohorts)
type bigBed 9 +
parent varFreqs on
bigDataUrl /gbdb/$D/varFreqs/_affected/varFreqsAffected.bb
tableBrowser off
visibility pack
itemRgb on
maxWindowToDraw 5000000
priority 0.11
mouseOver Var: ${name}
AA change: ${aaChange}
Var type: ${varType}
Conseq: ${consequence}
Affected AF: ${affectedAF}
Affected AC/AN: ${affectedAC} / ${affectedAN}
Affected cohorts: ${affectedCohorts}
Top affected by AF: ${topAffectedSources}
Background AF: ${backgroundAF}
filterValues.affectedCohorts SPARK|SFARI SPARK WES,SFARI_WGS|SFARI SPARK WGS,GREGoR|GREGoR,SCHEMA|SCHEMA,GA4K|GA4K PacBio LR
filterType.affectedCohorts multipleListOr