ba5350e41c26185f48dd56d074219d3a2eab7aed
mspeir
  Thu Jul 2 10:32:20 2026 -0700
New otto framework for G2P track, refs #36736

diff --git src/hg/utils/otto/g2p/g2pWrapper.sh src/hg/utils/otto/g2p/g2pWrapper.sh
new file mode 100755
index 00000000000..441ec2d8b9c
--- /dev/null
+++ src/hg/utils/otto/g2p/g2pWrapper.sh
@@ -0,0 +1,16 @@
+#!/bin/sh -e
+# Otto cron wrapper for the Gene2Phenotype (G2P) track.
+# Runs the worker and mails its combined output to otto-group.
+# Edit + commit the kent-tree copy, then copy to the hive otto dir:
+#   ~/kent/src/hg/utils/otto/g2p/g2pWrapper.sh
+
+PATH=/cluster/bin/x86_64:$PATH
+export PATH
+
+EMAIL="otto-group@ucsc.edu"
+WORKDIR="/hive/data/outside/otto/g2p"
+
+umask 002
+cd "$WORKDIR"
+# -E suppresses mail when there is no output (silent no-op when G2P is unchanged).
+./doG2p.py 2>&1 | mail -E -s "G2P otto build" $EMAIL