696ce0adb22c81b1df4f2a83efe46a4d987d23c9 mspeir Thu Jul 2 14:11:45 2026 -0700 Updating source tree crontab for G2P run, refs #36736 diff --git src/hg/utils/otto/otto.crontab src/hg/utils/otto/otto.crontab index 0958b88dbf4..9685ababc2a 100644 --- src/hg/utils/otto/otto.crontab +++ src/hg/utils/otto/otto.crontab @@ -59,30 +59,34 @@ 13 8 2 * * /hive/data/outside/otto/dbVar/dbVarWrapper.sh #Orphanet 10 7 10 * * /hive/data/outside/otto/orphanet/orphanetWrapper.sh #ClinVar MAILTO=otto-group@ucsc.edu 08 00 8 * * umask 002; /hive/data/outside/otto/clinvar/doUpdate.sh #MANE 11 5 * * 1 python3 /hive/data/outside/otto/mane/doMane.py #GenCC 8 16 * * 2 python3 /hive/data/outside/otto/genCC/doGenCC.py +#G2P (Gene2Phenotype) - monthly on the 5th; G2P publishes near month-end, so an +#early-month run catches the previous month's update (no-ops if unchanged) +22 6 5 * * /hive/data/outside/otto/g2p/g2pWrapper.sh + #OMIM 17 4 * * * /hive/data/outside/otto/omim/omimWrapper.sh 2>&1 #LOVD 14 13 * * mon /hive/data/outside/otto/lovd/doUpdate.sh #MitoMap 55 8 * * 3 /hive/data/outside/otto/mitoMap/checkMitoMapUpdate.sh #RefSeq Historical update notifier (RM #35766) - silent unless NCBI has a new release 40 8 * * 3 /hive/data/outside/otto/refSeqHistorical/checkRefSeqHistoricalUpdate.sh # InSiGHT VCEP ClinVar curated variants weekly update 08 03 * * 2 umask 002; /hive/data/outside/otto/insight/doUpdate.sh