2d9d194b4bb0e2ec25ca1d45739fdd418632dbb8 lrnassar Wed Jul 8 13:53:54 2026 -0700 Add db= to same-CGI self-links in hgTrackUi and hgc. refs #37840 Extends #37840 to same-CGI links that omitted db= and relied on the cart db, which still broke as shared, bookmarked, or search-indexed URLs. In hgTrackUi adds db to the superTrack member list, container-configure, description, sibling-track, duplicate/unduplicate, and quickLift-remove links. In hgc adds the current assembly's db to the shared anchor helpers (hgcAnchorSomewhereExt, hgcAnchorPosition, hgcAnchorWindow, hgcAnchorTranslatedChain, hgcAnchorPseudoGene), covering all their callers, plus the getDna, htcExtSeq, refGene, stsMap, cutter, cgapSage, mgc, peakClusters, regMotif, and pubs links. The foreign-assembly variant hgcAnchorSomewhereDb and the db2=/qlSourceDb= params are left untouched. diff --git src/hg/hgc/hgc.c src/hg/hgc/hgc.c index e453aff4613..15c7a86ea70 100644 --- src/hg/hgc/hgc.c +++ src/hg/hgc/hgc.c @@ -531,88 +531,88 @@ { static struct dyString *dy = NULL; if (dy == NULL) { dy = dyStringNew(128); dyStringPrintf(dy, "%s?%s", hgcName(), cartSidUrlString(cart)); } return dy->string; } static void hgcAnchorSomewhereExt(char *group, char *item, char *other, char *chrom, int start, int end, char *tbl) /* Generate an anchor that calls click processing program with item * and other parameters. */ { char *itemSafe = cgiEncode(item); -printf("<A HREF=\"%s&g=%s&i=%s&c=%s&l=%d&r=%d&o=%s&table=%s\">", - hgcPathAndSettings(), group, itemSafe, chrom, start, end, other, tbl); +printf("<A HREF=\"%s&db=%s&g=%s&i=%s&c=%s&l=%d&r=%d&o=%s&table=%s\">", + hgcPathAndSettings(), database, group, itemSafe, chrom, start, end, other, tbl); freeMem(itemSafe); } void hgcAnchorSomewhere(char *group, char *item, char *other, char *chrom) /* Generate an anchor that calls click processing program with item * and other parameters. */ { char *tbl = cgiUsualString("table", cgiString("g")); hgcAnchorSomewhereExt(group, item, other, chrom, winStart, winEnd, tbl); } void hgcAnchorPosition(char *group, char *item) /* Generate an anchor that calls click processing program with item * and group parameters. */ { char *tbl = cgiUsualString("table", cgiString("g")); -printf("<A HREF=\"%s&g=%s&i=%s&table=%s\">", - hgcPathAndSettings(), group, item, tbl); +printf("<A HREF=\"%s&db=%s&g=%s&i=%s&table=%s\">", + hgcPathAndSettings(), database, group, item, tbl); } void hgcAnchorWindow(char *group, char *item, int thisWinStart, int thisWinEnd, char *other, char *chrom) /* Generate an anchor that calls click processing program with item * and other parameters, INCLUDING the ability to specify left and * right window positions different from the current window*/ { -printf("<A HREF=\"%s&g=%s&i=%s&c=%s&l=%d&r=%d&o=%s\">", - hgcPathAndSettings(), group, item, chrom, +printf("<A HREF=\"%s&db=%s&g=%s&i=%s&c=%s&l=%d&r=%d&o=%s\">", + hgcPathAndSettings(), database, group, item, chrom, thisWinStart, thisWinEnd, other); } void hgcAnchorJalview(char *item, char *fa) /* Generate an anchor to jalview. */ { struct dyString *dy = cgiUrlString(); printf("<A HREF=\"%s?%s&jalview=YES\">", hgcName(), dy->string); dyStringFree(&dy); } void hgcAnchorTranslatedChain(int item, char *other, char *chrom, int cdsStart, int cdsEnd) /* Generate an anchor that calls click processing program with item * and other parameters. */ { char *tbl = cgiUsualString("table", cgiString("g")); -printf("<A HREF=\"%s&g=%s&i=%d&c=%s&l=%d&r=%d&o=%s&table=%s&qs=%d&qe=%d\">", - hgcPathAndSettings(), "htcChainTransAli", item, chrom, winStart, winEnd, other, +printf("<A HREF=\"%s&db=%s&g=%s&i=%d&c=%s&l=%d&r=%d&o=%s&table=%s&qs=%d&qe=%d\">", + hgcPathAndSettings(), database, "htcChainTransAli", item, chrom, winStart, winEnd, other, tbl, cdsStart, cdsEnd); } void hgcAnchorPseudoGene(char *item, char *other, char *chrom, char *tag, int start, int end, char *qChrom, int qStart, int qEnd, int chainId, char *db2) /* Generate an anchor to htcPseudoGene. */ { char *encodedItem = cgiEncode(item); -printf("<A HREF=\"%s&g=%s&i=%s&c=%s&l=%d&r=%d&o=%s&db2=%s&ci=%d&qc=%s&qs=%d&qe=%d&xyzzy=xyzzy#%s\">", - hgcPathAndSettings(), "htcPseudoGene", encodedItem, chrom, start, end, +printf("<A HREF=\"%s&db=%s&g=%s&i=%s&c=%s&l=%d&r=%d&o=%s&db2=%s&ci=%d&qc=%s&qs=%d&qe=%d&xyzzy=xyzzy#%s\">", + hgcPathAndSettings(), database, "htcPseudoGene", encodedItem, chrom, start, end, other, db2, chainId, qChrom, qStart, qEnd, tag); } void hgcAnchorSomewhereDb(char *group, char *item, char *other, char *chrom, char *db) /* Generate an anchor that calls click processing program with item * and other parameters. */ { printf("<A HREF=\"%s&g=%s&i=%s&c=%s&l=%d&r=%d&o=%s&db=%s\">", hgcPathAndSettings(), group, item, chrom, winStart, winEnd, other, db); } void hgcAnchor(char *group, char *item, char *other) /* Generate an anchor that calls click processing program with item * and other parameters. */ @@ -746,33 +746,33 @@ printf("<B>Position:</B> " "<A HREF=\"%s&db=%s&position=%s%%3A%d-%d\">", hgTracksPathAndSettings(), database, cgiEncode(chrom), start+1, end); printf("%s:%d-%d</A><BR>\n", chrom, start+1, end); /* printBand(chrom, (start + end)/2, 0, FALSE); */ printBand(chrom, start, end, FALSE); printf("<B>Genomic Size:</B> %d<BR>\n", end - start); if (strand != NULL && differentString(strand,".") && isNotEmpty(strand)) printf("<B>Strand:</B> %s<BR>\n", strand); else strand = "?"; if (featDna && end > start) { char *tbl = cgiUsualString("table", cgiString("g")); strand = cgiEncode(strand); - printf("<A HREF=\"%s&o=%d&g=getDna&i=%s&c=%s&l=%d&r=%d&strand=%s&table=%s\">" + printf("<A HREF=\"%s&db=%s&o=%d&g=getDna&i=%s&c=%s&l=%d&r=%d&strand=%s&table=%s\">" "View DNA for this feature</A> (%s/%s)<BR>\n", hgcPathAndSettings(), - start, (item != NULL ? cgiEncode(item) : ""), + database, start, (item != NULL ? cgiEncode(item) : ""), cgiEncode(chrom), start, end, strand, tbl, trackHubSkipHubName(database), trackHubSkipHubName(hGenome(database))); } } void printPosOnScaffold(char *chrom, int start, int end, char *strand) /* Print position lines referenced to scaffold. 'strand' argument may be null. */ { char *scaffoldName; int scaffoldStart, scaffoldEnd; if (!hScaffoldPos(database, chrom, start, end, &scaffoldName, &scaffoldStart, &scaffoldEnd)) { printPosOnChrom(chrom, start,end,strand, FALSE, NULL); return; } @@ -12198,31 +12198,31 @@ sqlFreeResult(&sr); sqlSafef(query, sizeof(query), "select distinct l.mrnaAcc from %s l where locusLinkId = '%s' order by mrnaAcc asc", refLinkTable, geneId); sr = sqlMustGetResult(conn, query); if (sr != NULL) { int printedCnt; printedCnt = 0; while ((row = sqlNextRow(sr)) != NULL) { if (printedCnt < 1) printf("<B>RefSeq Gene(s): </B>"); else printf(", "); - printf("<A HREF=\"%s%s&o=%s&t=%s\">", "../cgi-bin/hgc?g=refGene&i=", + printf("<A HREF=\"../cgi-bin/hgc?db=%s&g=refGene&i=%s&o=%s&t=%s\">", database, row[0], chromStart, chromEnd); printf("%s</A></B>", row[0]); printedCnt++; } if (printedCnt >= 1) printf("<BR>\n"); } sqlFreeResult(&sr); } // show Related UCSC Gene links char *knownDatabase = hdbDefaultKnownDb(database); sqlSafef(query, sizeof(query), "select distinct kgId from %s.kgXref x, %s l, omim2gene g where x.refseq = mrnaAcc and l.omimId=%s and g.omimId=l.omimId and g.entryType='gene'", knownDatabase, refLinkTable, itemName); sr = sqlMustGetResult(conn, query); @@ -15416,54 +15416,54 @@ /* Print heading info including link to NCBI. */ if (tiNum != NULL) ++tiNum; cartWebStart(cart, database, "%s", itemName); printf("<H1>Information on Mouse %s %s</H1>", (tiNum == NULL ? "Contig" : "Read"), itemName); /* Print links to NCBI and to sequence. */ if (tiNum != NULL) { printf("Link to "); printf("<A HREF=\"https://www.ncbi.nlm.nih.gov/Traces/trace.cgi?val=%s\" TARGET=_blank>", tiNum); printf("NCBI Trace Repository for %s\n</A><BR>\n", itemName); } printf("Get "); -printf("<A HREF=\"%s&g=htcExtSeq&c=%s&l=%d&r=%d&i=%s\">", - hgcPathAndSettings(), seqName, winStart, winEnd, itemName); +printf("<A HREF=\"%s&db=%s&g=htcExtSeq&c=%s&l=%d&r=%d&i=%s\">", + hgcPathAndSettings(), database, seqName, winStart, winEnd, itemName); printf("Mouse DNA</A><BR>\n"); /* Print info about mate pair. */ if (tiNum != NULL && sqlTableExists(conn, "mouseTraceInfo")) { char buf[256]; char *templateId; boolean gotMate = FALSE; sqlSafef(query, sizeof query, "select templateId from mouseTraceInfo where ti = '%s'", itemName); templateId = sqlQuickQuery(conn, query, buf, sizeof(buf)); if (templateId != NULL) { sqlSafef(query, sizeof query, "select ti from mouseTraceInfo where templateId = '%s'", templateId); sr = sqlGetResult(conn, query); while ((row = sqlNextRow(sr)) != NULL) { char *ti = row[0]; if (!sameString(ti, itemName)) { printf("Get "); - printf("<A HREF=\"%s&g=htcExtSeq&c=%s&l=%d&r=%d&i=%s\">", - hgcPathAndSettings(), seqName, winStart, winEnd, ti); + printf("<A HREF=\"%s&db=%s&g=htcExtSeq&c=%s&l=%d&r=%d&i=%s\">", + hgcPathAndSettings(), database, seqName, winStart, winEnd, ti); printf("DNA for read on other end of plasmid</A><BR>\n"); gotMate = TRUE; } } sqlFreeResult(&sr); } if (!gotMate) printf("No read from other end of plasmid in database.<BR>\n"); } /* Get alignment info and print. */ printf("<H2>Alignments</H2>\n"); if (!hFindSplitTable(database, seqName, tdb->table, table, sizeof table, &hasBin)) errAbort("track %s not found", tdb->table); sqlSafef(query, sizeof query, "select * from %s where qName = '%s'", table, itemName); @@ -15991,32 +15991,32 @@ if (sameString(words[0], "psl") && sameString(words[1], "xeno")) { /* words[2] will contain other db */ doAlignmentOtherDb(tdb, itemName); freeMem(typeLine); return; } } freeMem(typeLine); cartWebStart(cart, database, "%s", itemName); printPosOnChrom(chrom,start,end,NULL,FALSE,NULL); printf("<H1>Information on %s Sequence %s</H1>", otherGenome, itemName); printf("Get "); -printf("<A HREF=\"%s&g=htcExtSeq&c=%s&l=%d&r=%d&i=%s\">", - hgcPathAndSettings(), seqName, winStart, winEnd, itemName); +printf("<A HREF=\"%s&db=%s&g=htcExtSeq&c=%s&l=%d&r=%d&i=%s\">", + hgcPathAndSettings(), database, seqName, winStart, winEnd, itemName); printf("%s DNA</A><BR>\n", otherGenome); /* Get alignment info and print. */ printf("<H2>Alignments</H2>\n"); if (!hFindSplitTable(database, seqName, tdb->table, table, sizeof table, &hasBin)) errAbort("doAlignCompGeno track %s not found", tdb->table); /* if this is a non-split table then query with tName */ if (startsWith(tdb->table, table)) sqlSafef(query, sizeof(query), "select * from %s where qName = '%s' and tName = '%s'", table, itemName,seqName); else sqlSafef(query, sizeof(query), "select * from %s where qName = '%s'", table, itemName); sr = sqlGetResult(conn, query); while ((row = sqlNextRow(sr)) != NULL) { @@ -16032,32 +16032,32 @@ void doTSS(struct trackDb *tdb, char *itemName) /* Handle click on DBTSS track. */ { char query[256]; struct sqlConnection *conn = hAllocConn(database); struct sqlResult *sr = NULL; char **row = NULL; int start = cartInt(cart, "o"); struct psl *pslList = NULL, *psl = NULL; boolean hasBin = TRUE; char *table = "refFullAli"; /* Table with the pertinent PSL data */ cartWebStart(cart, database, "%s", itemName); printf("<H1>Information on DBTSS Sequence %s</H1>", itemName); printf("Get "); -printf("<A HREF=\"%s&g=htcExtSeq&c=%s&l=%d&r=%d&i=%s\">", - hgcPathAndSettings(), seqName, winStart, winEnd, itemName); +printf("<A HREF=\"%s&db=%s&g=htcExtSeq&c=%s&l=%d&r=%d&i=%s\">", + hgcPathAndSettings(), database, seqName, winStart, winEnd, itemName); printf("Sequence</A><BR>\n"); /* Get alignment info and print. */ printf("<H2>Alignments</H2>\n"); sqlSafef(query, sizeof query, "select * from %s where qName = '%s'", table, itemName); sr = sqlGetResult(conn, query); while ((row = sqlNextRow(sr)) != NULL) { psl = pslLoad(row + hasBin); slAddHead(&pslList, psl); } sqlFreeResult(&sr); slReverse(&pslList); printAlignments(pslList, start, "htcCdnaAli", tdb->table, itemName); @@ -16606,32 +16606,32 @@ if (stsRow.score == 1000) printf("<H3>This is the only location found for %s</H3>\n",marker); else { sqlFreeResult(&sr); printf("<H4>Other locations found for %s in the genome:</H4>\n", marker); printf("<TABLE>\n"); sqlSafef(query, sizeof query, "SELECT * FROM %s WHERE name = '%s' " "AND (chrom != '%s' OR chromStart != %d OR chromEnd != %d)", table, marker, seqName, start, end); sr = sqlGetResult(conn,query); while ((row = sqlNextRow(sr)) != NULL) { stsMapMouseStaticLoad(row, &stsRow); - printf("<TR><TD>%s:</TD><TD><A HREF = \"../cgi-bin/hgc?hgsid=%s&o=%u&t=%d&g=stsMapMouse&i=%s&c=%s\" target=_blank>%d</A></TD></TR>\n", - stsRow.chrom, hgsid, stsRow.chromStart,stsRow.chromEnd, stsRow.name, stsRow.chrom,(stsRow.chromStart+stsRow.chromEnd)>>1); + printf("<TR><TD>%s:</TD><TD><A HREF = \"../cgi-bin/hgc?hgsid=%s&db=%s&o=%u&t=%d&g=stsMapMouse&i=%s&c=%s\" target=_blank>%d</A></TD></TR>\n", + stsRow.chrom, hgsid, database, stsRow.chromStart,stsRow.chromEnd, stsRow.name, stsRow.chrom,(stsRow.chromStart+stsRow.chromEnd)>>1); } printf("</TABLE>\n"); } } webNewSection("Notes:"); printTrackHtml(tdb); sqlFreeResult(&sr); hFreeConn(&conn); hFreeConn(&conn1); } void doStsMapMouseNew(struct trackDb *tdb, char *marker) /* Respond to click on an STS marker. */ @@ -16792,33 +16792,33 @@ if (stsRow.score == 1000) printf("<H3>This is the only location found for %s</H3>\n",marker); else { sqlFreeResult(&sr); printf("<H4>Other locations found for %s in the genome:</H4>\n", marker); printf("<TABLE>\n"); sqlSafef(query, sizeof query, "SELECT * FROM %s WHERE name = '%s' " "AND (chrom != '%s' OR chromStart != %d OR chromEnd != %d)", table, marker, seqName, start, end); sr = sqlGetResult(conn,query); while ((row = sqlNextRow(sr)) != NULL) { stsMapMouseNewStaticLoad(row, &stsRow); - printf("<TR><TD>%s:</TD><TD><A HREF = \"../cgi-bin/hgc?hgsid=%s&o=%u&t=%d&" + printf("<TR><TD>%s:</TD><TD><A HREF = \"../cgi-bin/hgc?hgsid=%s&db=%s&o=%u&t=%d&" "g=stsMapMouseNew&i=%s&c=%s\" target=_blank>%d</A></TD></TR>\n", - stsRow.chrom, hgsid, stsRow.chromStart,stsRow.chromEnd, stsRow.name, + stsRow.chrom, hgsid, database, stsRow.chromStart,stsRow.chromEnd, stsRow.name, stsRow.chrom,(stsRow.chromStart+stsRow.chromEnd)>>1); } printf("</TABLE>\n"); } } webNewSection("Notes:"); printTrackHtml(tdb); sqlFreeResult(&sr); hFreeConn(&conn); hFreeConn(&conn1); } void doStsMapRat(struct trackDb *tdb, char *marker) /* Respond to click on an STS marker. */ @@ -16972,32 +16972,32 @@ htmlHorizontalLine(); if (stsRow.score == 1000) printf("<H3>This is the only location found for %s</H3>\n",marker); else { sqlFreeResult(&sr); printf("<H4>Other locations found for %s in the genome:</H4>\n", marker); printf("<TABLE>\n"); sqlSafef(query, sizeof(query), "name = '%s'", marker); sr = hRangeQuery(conn, table, seqName, start, end, query, &hasBin); while ((row = sqlNextRow(sr)) != NULL) { stsMapRatStaticLoad(row+hasBin, &stsRow); - printf("<TR><TD>%s:</TD><TD><A HREF = \"../cgi-bin/hgc?hgsid=%s&o=%u&t=%d&g=stsMapRat&i=%s&c=%s\" target=_blank>%d</A></TD></TR>\n", - stsRow.chrom, hgsid, stsRow.chromStart,stsRow.chromEnd, stsRow.name, stsRow.chrom,(stsRow.chromStart+stsRow.chromEnd)>>1); + printf("<TR><TD>%s:</TD><TD><A HREF = \"../cgi-bin/hgc?hgsid=%s&db=%s&o=%u&t=%d&g=stsMapRat&i=%s&c=%s\" target=_blank>%d</A></TD></TR>\n", + stsRow.chrom, hgsid, database, stsRow.chromStart,stsRow.chromEnd, stsRow.name, stsRow.chrom,(stsRow.chromStart+stsRow.chromEnd)>>1); } printf("</TABLE>\n"); } } webNewSection("Notes:"); printTrackHtml(tdb); sqlFreeResult(&sr); hFreeConn(&conn); hFreeConn(&conn1); } void doFishClones(struct trackDb *tdb, char *clone) /* Handle click on the FISH clones track */ { char query[256]; @@ -17462,33 +17462,33 @@ printf("<B>%s starting base:</B> %d<BR>\n", org, el.chromStart+1); printf("<B>%s ending base:</B> %d<BR>\n", org, el.chromEnd); printf("<B>score:</B> %d<BR>\n", el.score); printf("<B>strand:</B> %s<BR>\n", el.strand); printf("<B>size:</B> %d (%s), %d (%s)<BR>\n", (el.xenoEnd - el.xenoStart), xenoOrg, (el.chromEnd - el.chromStart), org); if (xenoDb != NULL) { printf("<A HREF=\"%s?db=%s&position=%s:%d-%d\" TARGET=_BLANK>%s Genome Browser</A> at %s:%d-%d <BR>\n", hgTracksName(), xenoDb, xenoChrom, el.xenoStart, el.xenoEnd, xenoOrg, xenoChrom, el.xenoStart, el.xenoEnd); } - printf("<A HREF=\"%s&o=%d&g=getDna&i=%s&c=%s&l=%d&r=%d&strand=%s&table=%s\">" + printf("<A HREF=\"%s&db=%s&o=%d&g=getDna&i=%s&c=%s&l=%d&r=%d&strand=%s&table=%s\">" "View DNA for this feature</A><BR>\n", hgcPathAndSettings(), - el.chromStart, cgiEncode(el.name), + database, el.chromStart, cgiEncode(el.name), el.chrom, el.chromStart, el.chromEnd, el.strand, tbl); freez(&elname); } printTrackHtml(tdb); sqlFreeResult(&sr); hFreeConn(&conn); } void printDbSnpRsUrl(char *rsId, char *labelFormat, ...) /* Print a link to dbSNP's report page for an rs[0-9]+ ID. */ { char dbSnpUrl[2048]; safef (dbSnpUrl, sizeof(dbSnpUrl), dbSnpFormat, rsId); printf ("<a href=\"%s\" target=\"_blank\">", dbSnpUrl); @@ -24536,66 +24536,66 @@ if (c && o && t) { int left = atoi(o); int right = atoi(t); printPosOnChrom(c, left, right, NULL, FALSE, cut->name); } puts("<B>Recognition Sequence: </B>"); cutterPrintSite(cut); puts("<BR>\n"); printf("<B>Palindromic: </B>%s<BR>\n", (cut->palindromic) ? "YES" : "NO"); if (cut->numSciz > 0) { int i; puts("<B>Isoschizomers: </B>"); for (i = 0; i < cut->numSciz-1; i++) - printf("<A HREF=\"%s&g=%s&i=%s\">%s</A>, ", hgcPathAndSettings(), CUTTERS_TRACK_NAME, cut->scizs[i], cut->scizs[i]); - printf("<A HREF=\"%s&g=%s&i=%s\">%s</A><BR>\n", hgcPathAndSettings(), CUTTERS_TRACK_NAME, cut->scizs[cut->numSciz-1], cut->scizs[cut->numSciz-1]); + printf("<A HREF=\"%s&db=%s&g=%s&i=%s\">%s</A>, ", hgcPathAndSettings(), database, CUTTERS_TRACK_NAME, cut->scizs[i], cut->scizs[i]); + printf("<A HREF=\"%s&db=%s&g=%s&i=%s\">%s</A><BR>\n", hgcPathAndSettings(), database, CUTTERS_TRACK_NAME, cut->scizs[cut->numSciz-1], cut->scizs[cut->numSciz-1]); } if (isoligs) { struct slName *cur; puts("<B>Isoligamers: </B>"); for (cur = isoligs; cur->next != NULL; cur = cur->next) - printf("<A HREF=\"%s&g=%s&i=%s\">%s</A>, ", hgcPathAndSettings(), CUTTERS_TRACK_NAME, cur->name, cur->name); - printf("<A HREF=\"%s&g=%s&i=%s\">%s</A><BR>\n", hgcPathAndSettings(), CUTTERS_TRACK_NAME, cur->name, cur->name); + printf("<A HREF=\"%s&db=%s&g=%s&i=%s\">%s</A>, ", hgcPathAndSettings(), database, CUTTERS_TRACK_NAME, cur->name, cur->name); + printf("<A HREF=\"%s&db=%s&g=%s&i=%s\">%s</A><BR>\n", hgcPathAndSettings(), database, CUTTERS_TRACK_NAME, cur->name, cur->name); slFreeList(&isoligs); } if (cut->numRefs > 0) { int i, count = 1; char **row; struct sqlResult *sr; puts("<B>References:</B><BR>\n"); sqlSafef(query, sizeof(query), "select * from rebaseRefs"); sr = sqlGetResult(conn, query); while ((row = sqlNextRow(sr)) != NULL) { int refNum = atoi(row[0]); for (i = 0; i < cut->numRefs; i++) { if (refNum == cut->refs[i]) printf("%d. %s<BR>\n", count++, row[1]); } } sqlFreeResult(&sr); } if (c && o && t) { puts("<BR><B>Download BED of enzymes in this browser range:</B> "); - printf("<A HREF=\"%s&g=%s&l=%s&r=%s&c=%s&doGetBed=all\">all enzymes</A>, ", hgcPathAndSettings(), CUTTERS_TRACK_NAME, l, r, c); - printf("<A HREF=\"%s&g=%s&l=%s&r=%s&c=%s&doGetBed=%s\">just %s</A><BR>\n", hgcPathAndSettings(), CUTTERS_TRACK_NAME, l, r, c, cut->name, cut->name); + printf("<A HREF=\"%s&db=%s&g=%s&l=%s&r=%s&c=%s&doGetBed=all\">all enzymes</A>, ", hgcPathAndSettings(), database, CUTTERS_TRACK_NAME, l, r, c); + printf("<A HREF=\"%s&db=%s&g=%s&l=%s&r=%s&c=%s&doGetBed=%s\">just %s</A><BR>\n", hgcPathAndSettings(), database, CUTTERS_TRACK_NAME, l, r, c, cut->name, cut->name); } } webIncludeHelpFile(CUTTERS_TRACK_NAME, TRUE); cutterFree(&cut); hFreeConn(&conn); } static void doAnoEstTcl(struct trackDb *tdb, char *item) /* Print info about AnoEst uniquely-clustered item. */ { struct sqlConnection *conn = hAllocConn(database); int start = cartInt(cart, "o"); genericHeader(tdb, item); printCustomUrl(tdb, item, TRUE); genericBedClick(conn, tdb, item, start, 12);