e6bcec351aa8f5bc7218e8862e15c149aadb3479 lrnassar Fri Jul 10 12:18:40 2026 -0700 lrSv: complete the longReadVariants rename - reparent subtracks and update refs. refs #36258 Completes the previous rename commit (which carried only the colorsDbLegacy file moves). Renames "track lrSv" to "track longReadVariants" in lrSv.ra (adds "html lrSv" to keep the existing description page), reparents all subtracks plus the merged lrSvAll and its lrSvMergeAll.py generator, and updates the hs1 override, relatedTracks.ra, and the mei/meiHgsvc3/srSv/lrSvAll cross-links. Retitles the retired colorsDbLegacy track and reparents its subtracks. Only the internal track name changes; subtrack names, /gbdb/$D/lrSv/ data paths, and the lrSv.ra filename are unchanged. diff --git src/hg/makeDb/trackDb/human/mei.html src/hg/makeDb/trackDb/human/mei.html index e708a6d62a3..0d9f2a04f42 100644 --- src/hg/makeDb/trackDb/human/mei.html +++ src/hg/makeDb/trackDb/human/mei.html @@ -32,31 +32,31 @@
  • HMEID 5675 MEIs - 36,699 mobile element insertions called by MELT on 5,675 samples from the NyuWa Chinese cohort and the 1000 Genomes Project, with per-cohort and per-super-population allele frequencies (Niu et al. 2022, Nucleic Acids Res). hg38 only.
  • SweGen 1000 MEIs - 18,090 mobile element insertions called by MELT v2.0.2 on the 1,000 SweGen Swedish whole-genome samples (Ameur et al. 2017, Eur J Hum Genet), lifted from GRCh37 to hg38. The short-variant frequencies for the same cohort are in the SweGen subtrack of SNV Frequencies.

    • -Related: Long-read Structural Variants +Related: Long-read Structural Variants contains the parent SV callsets from which several of these MEI tracks are derived. RepeatMasker shows all annotated mobile elements in the reference genome (regardless of whether they are polymorphic).

    Display Conventions and Configuration

    Each MEI is shown as a 1-bp anchor block at the position where the insertion attaches to the reference. Items are colored by element class: