e6bcec351aa8f5bc7218e8862e15c149aadb3479
lrnassar
  Fri Jul 10 12:18:40 2026 -0700
lrSv: complete the longReadVariants rename - reparent subtracks and update refs. refs #36258

Completes the previous rename commit (which carried only the colorsDbLegacy file
moves). Renames "track lrSv" to "track longReadVariants" in lrSv.ra (adds
"html lrSv" to keep the existing description page), reparents all subtracks plus
the merged lrSvAll and its lrSvMergeAll.py generator, and updates the hs1
override, relatedTracks.ra, and the mei/meiHgsvc3/srSv/lrSvAll cross-links.
Retitles the retired colorsDbLegacy track and reparents its subtracks. Only the
internal track name changes; subtrack names, /gbdb/$D/lrSv/ data paths, and the
lrSv.ra filename are unchanged.

diff --git src/hg/makeDb/trackDb/human/trackDb.ra src/hg/makeDb/trackDb/human/trackDb.ra
index c2d51050900..d7639b02730 100644
--- src/hg/makeDb/trackDb/human/trackDb.ra
+++ src/hg/makeDb/trackDb/human/trackDb.ra
@@ -5615,31 +5615,31 @@
 baseColorDefault genomicCodons
 
 searchTable ncbiRefSeqHistorical
 searchMethod exact
 searchType genePred
 semiShortCircuit 1
 termRegex [N][MR]_[0-9]{6}[0-9]*\.[0-9]+
 searchPriority 20
 
 
 include alphaMissense.ra
 
 include mitoMap.ra
 
 include exonprimers.ra alpha
-include longReadVariants.ra
+include colorsDbLegacy.ra alpha
 
 include g2p.ra
 include varFreqs.ra
 include phasedVars.ra
 
 track dnaMethylation
 superTrack on
 shortLabel DNA Methylation
 longLabel DNA Methylation
 group regulation
 priority 3
 html dnaMethylation.html
 
 include methylationAtlas.ra
 include methylationAtlasSignals.ra