1a9cdfb7971489ab9f8291970006af01a1813fc6 lrnassar Wed Jul 8 12:28:23 2026 -0700 Squashing old pennantIcons, no RM diff --git src/hg/makeDb/trackDb/human/phasedVars.ra src/hg/makeDb/trackDb/human/phasedVars.ra index 3cfd8844902..8ee60ac4909 100644 --- src/hg/makeDb/trackDb/human/phasedVars.ra +++ src/hg/makeDb/trackDb/human/phasedVars.ra @@ -1,77 +1,76 @@ track phasedVars shortLabel Phased Variants longLabel Phased Variants from various sequencing projects group varRep type bed 12 visibility hide superTrack on -pennantIcon New red ../goldenPath/newsarch.html#020926 "Released Feb. 09, 2026" track mexbb shortLabel Mexico Biobank, 6k Array longLabel Phased Variants: Mexico Biobank 6k Array tableBrowser off parent phasedVars on bigDataUrl /gbdb/$D/phasedVars/mexbb/MXBv2.vcf.gz visibility pack type vcfTabix hapClusterEnabled true dataVersion Nov 2025 (hg38 lift) priority 1 html phasedVars.html track hgdp shortLabel Human Genome Diversity Project, 1k WGS longLabel Phased Variants: Human Genome Diversity Project (HGDP) - 1043 samples, isolated populations type vcfTabix parent phasedVars on bigDataUrl /gbdb/$D/phasedVars/hgdp/hgdp_wgs.20190516.full.vcf.gz visibility pack dataVersion 2019-05-16 priority 2 html phasedVars.html track sgdp shortLabel Simons Genome Diversity Project 0.3k WGS longLabel Phased Variants: Simons Genome Diversity Project - 279 samples, unmixed populations type vcfTabix parent phasedVars on bigDataUrl /gbdb/$D/phasedVars/sgdp/SGDP.nh2.vcf.gz visibility pack dataVersion 2016-12-07 public (hg38 lift) priority 4 html phasedVars.html track hgdp1k shortLabel gnomAD HGDP+1000G 4k WGS longLabel Phased Variants: gnomAD HGDP + 1000 genomes callset - 4094 whole genomes, 80 populations type vcfTabix parent phasedVars on bigDataUrl /gbdb/$D/phasedVars/hgdp1k/gnomad.genomes.v3.1.2.hgdp_tgp.vcf.gz visibility pack dataVersion v 3.1.2 priority 5 html phasedVars.html track han945SvVcf parent phasedVars bigDataUrl /gbdb/$D/phasedVars/han945genotypes.vcf.gz shortLabel SVs from 945 Han Chinese longLabel Phased Variants: Structural variants from 945 Han Chinese SVs type vcfTabix visibility dense release alpha priority 10 track lrSv1kgOntPhased parent phasedVars bigDataUrl /gbdb/$D/phasedVars/1kgOntPhased.vcf.gz shortLabel SVs from 1000G ONT longLabel Phased Variants: Structural variants from 1,019 diverse humans (1000 Genomes Vienna ONT, shapeit5) type vcfTabix visibility dense sampleColorFile Superpopulation=/gbdb/$D/phasedVars/1kgOntPhased.superpopColors.txt sampleMetadataFile /gbdb/$D/phasedVars/1kgOntPhased.sampleMeta.txt release alpha priority 11