44027478d0f745cc34c843717bee4a6a397b6022
max
  Mon Aug 10 09:05:32 2026 -0700
hgc: route transMap, retrogene and literature alignments to the modern view too, refs #37893

These three click pages live in their own files (transMapClick.c, retroClick.c,
pubs.c) and called htmlFramesetStart directly, so they were missed when the other
alignment handlers moved to the modern single-page view. They all render through
showSomeAlignment, so exporting alnModernStart (was static) and swapping their
htmlFramesetStart call for it is enough: with modernAlignPage set they now show
the modern page (neutral, non-BLAT chrome), and the classic frameset otherwise.

diff --git src/hg/hgc/transMapClick.c src/hg/hgc/transMapClick.c
index b0f044cd856..19b3863071b 100644
--- src/hg/hgc/transMapClick.c
+++ src/hg/hgc/transMapClick.c
@@ -423,20 +423,20 @@
     seq = getCdnaSeqDb(tdb, transMapIdToSeqId(mappedId));
     }
 else
     {
     bag = transMapBagLoadBig(tdb, mappedId);
     seq = newDnaSeq(cloneString(bag->meta->oSequence), strlen(bag->meta->oSequence),
                     mappedId);
     }
 
 struct genbankCds cds;
 if (isEmpty(bag->meta->oCDS) || !genbankCdsParse(bag->meta->oCDS, &cds))
     ZeroVar(&cds);  /* can't get or parse CDS, so zero it */
 
 char title[1024];
 safef(title, sizeof title, "%s vs Genomic", mappedId);
-htmlFramesetStart(title);
+alnModernStart(title);
 showSomeAlignment(bag->psl, seq, gftDna, 0, seq->size, NULL, cds.start, cds.end);
 dnaSeqFree(&seq);
 transMapBagFree(&bag);
 }