798b37017a4e1b95f3ccdf7c8b477dfb5446a324
lrnassar
  Fri Jul 24 15:22:34 2026 -0700
lrSv: QA fixes for cardSv/noyvertSv additions - BND filter, makedoc, link targets. refs #37888

Add BND to filterValues.svType on the longReadVariants supertrack and the merged
lrSvAll track (and the lrSvMergeAll.py generator) so the breakend variants that
noyvertSv contributes are filterable. Correct a stale makedoc comment that said
CARD was not in the lrSvAll merge (it is). Add target="_blank" to the API and
hgdownload links in cardSv.html and noyvertSv.html.

diff --git src/hg/makeDb/trackDb/human/lrSv.ra src/hg/makeDb/trackDb/human/lrSv.ra
index fd6aa80a4d2..ef296a0dc36 100644
--- src/hg/makeDb/trackDb/human/lrSv.ra
+++ src/hg/makeDb/trackDb/human/lrSv.ra
@@ -1,29 +1,29 @@
 track longReadVariants
 superTrack on
 shortLabel Long-read SVs
 longLabel Structural Variants from Long-read Sequencing
 html lrSv
 group varRep
 visibility hide
 pennantIcon New red ../goldenPath/newsarch.html#071626 "Released Jul. 16, 2026"
 # Supertrack-level filters. These are rendered on the supertrack's own
 # hgTrackUi page (superTrackUi in hgTrackUi.c). Cart values stored under
 # "longReadVariants.filter.<field>.min/max" are inherited at read time by every
 # subtrack via cartOptionalStringClosestToHome() walking tdb->parent. A
 # subtrack-level filter always wins over the supertrack-level one.
-filterValues.svType DEL|DEL (Deletion),INS|INS (Insertion),INV|INV (Inversion),CPX|CPX (Complex rearrangement),DUP|DUP (Duplication),INSDEL|INSDEL (Insertion-deletion),MIXED|MIXED (multi-allele snarl),TRA|TRA (Translocation)
+filterValues.svType DEL|DEL (Deletion),INS|INS (Insertion),INV|INV (Inversion),CPX|CPX (Complex rearrangement),DUP|DUP (Duplication),INSDEL|INSDEL (Insertion-deletion),MIXED|MIXED (multi-allele snarl),TRA|TRA (Translocation),BND|BND (Breakend)
 filterType.svType multipleListOr
 filterLabel.svType SV Type
 filter.svLen 0:250000000
 filterByRange.svLen on
 filterLabel.svLen SV Length (bp)
 filter.insLen 0:30176500
 filterByRange.insLen on
 filterLabel.insLen Insertion Length (bp)
 filter.AC 0:30000
 filterByRange.AC on
 filterLabel.AC Allele Count
 noScoreFilter on
 
     include lrSvAll.ra