798b37017a4e1b95f3ccdf7c8b477dfb5446a324
lrnassar
  Fri Jul 24 15:22:34 2026 -0700
lrSv: QA fixes for cardSv/noyvertSv additions - BND filter, makedoc, link targets. refs #37888

Add BND to filterValues.svType on the longReadVariants supertrack and the merged
lrSvAll track (and the lrSvMergeAll.py generator) so the breakend variants that
noyvertSv contributes are filterable. Correct a stale makedoc comment that said
CARD was not in the lrSvAll merge (it is). Add target="_blank" to the API and
hgdownload links in cardSv.html and noyvertSv.html.

diff --git src/hg/makeDb/trackDb/human/lrSvAll.ra src/hg/makeDb/trackDb/human/lrSvAll.ra
index b322c352434..c07bbf83beb 100644
--- src/hg/makeDb/trackDb/human/lrSvAll.ra
+++ src/hg/makeDb/trackDb/human/lrSvAll.ra
@@ -1,31 +1,31 @@
 # AUTO-GENERATED by ~/kent/src/hg/makeDb/scripts/lrSv/lrSvMergeAll.py
 # Do not edit by hand - re-run the merge script and re-commit.
 
     track lrSvAll
     parent longReadVariants
     bigDataUrl /gbdb/$D/lrSv/lrSvAll.bb
     shortLabel All LR SVs merged
     longLabel All long-read SVs merged across subtracks by exact position, with per-database AC
     type bigBed 9 +
     itemRgb on
     visibility pack
     mouseOver <b>Var</b>: $name ($svType)<br><b>SV len</b>: $svLen<br><b>Ins len</b>: $insLen<br><b>Sources</b>: $sources<br><b>AF range</b>: $minAF-$maxAF<br><b>AC</b>: $AC
     filterValues.sources CoLoRSdb|CoLoRSdb 1427 (PacBio),1000G-ONT-Vienna|1KG ONT Vienna 1019,1000G-ONT|1KG ONT 100 (Gustafson),AoU1K|All of Us 1027 (PacBio),Han945|Han Chinese 945,TommoJapan|ToMMo 333 (Japanese),GA4K|GA4K 502 (rare disease),deCODE|deCODE 3622 (Icelandic),HPRCv2.1|HPRC v2.1 233,HGSVC2|HGSVC2 32,HGSVC3|HGSVC3 65,ArabUAE53|Arab APR 53,China58|CPC 58 (Chinese),Svatalog101|SVatalog 101,CARD|NIH CARD 351 (brain),Noyvert888|Noyvert 888 (1000G ONT)
     filterType.sources multipleListOr
     filterLabel.sources Source Database
-    filterValues.svType DEL,INS,DUP,INV,CPX,MIXED,INSDEL,TRA
+    filterValues.svType DEL,INS,DUP,INV,CPX,MIXED,INSDEL,TRA,BND
     filterType.svType multipleListOr
     filterLabel.svType SV Type
     filter.svLen 0:30000000
     filterByRange.svLen on
     filterLabel.svLen SV Length (bp)
     filter.insLen 0:600000
     filterByRange.insLen on
     filterLabel.insLen Insertion Length (bp)
     filter.maxAF 0:1
     filterByRange.maxAF on
     filterLimits.maxAF 0:1
     filterLabel.maxAF Max Allele Frequency (across DBs)
     filter.minAF 0:1
     filterByRange.minAF on
     filterLimits.minAF 0:1