cff06e342525a24806d958cf8af28e9f54f1503c max Sat Jul 25 18:25:07 2026 -0700 mei: change item name format to -: diff --git src/hg/makeDb/scripts/mei/meiHgsvc3CsvToBed.py src/hg/makeDb/scripts/mei/meiHgsvc3CsvToBed.py index 2d7b6430b27..ddc5f351ae6 100755 --- src/hg/makeDb/scripts/mei/meiHgsvc3CsvToBed.py +++ src/hg/makeDb/scripts/mei/meiHgsvc3CsvToBed.py @@ -143,32 +143,32 @@ score = max(0, min(1000, int(round(altAF * 1000)))) cls = shortClass(teDesignation) color = COLOR_BY_CLASS.get(cls, COLOR_BY_CLASS["Other"]) refSd = float(info.get("REF_SD", 0)) if info.get("REF_SD", False) else 0.0 refTrf = "True" if info.get("REF_TRF", False) else "False" sourceSample = info.get("SAMPLE", "") callerCount = int(row[idx["Caller_Count"]]) if row[idx["Caller_Count"]] else 0 l1meAid = "Yes" if row[idx["L1ME-AID"]] == "1" else "No" palmer = "Yes" if row[idx["PALMER"]] == "1" else "No" # Inserted DNA: VCF convention puts the anchor base at ALT[0] (= REF[0]). insertSeq = alt[1:] if len(alt) > 1 else "" - # Name format matches lrSv tracks: INS-:. - name = f"INS-{svLen}:{carrierCount}" + # Name format: -: (e.g. Alu-281:33). + name = f"{cls}-{svLen}:{carrierCount}" out.write("\t".join([ chrom, str(chromStart), str(chromEnd), name, str(score), ".", str(chromStart), str(chromEnd), color, cls, teDesignation, str(svLen), str(altAC),