3870b9e5e1b3fc67b0638fa77f6644bf5f133c9f
max
  Mon Jul 20 10:52:55 2026 -0700
lrSv: relabel lrSv1kLin and gustafsonSv, write lrSv1kLin description

Per Eichler lab request: relabel lrSv1kLin to 'Structural Variants from 1218
1KG individuals (HiFi, ONT & assembly)' and write its description page (drawn
from HPRC year 2, HGSVC3, Vienna 1KG-ONT and UW 1KG-ONT). Relabel gustafsonSv
as the University of Washington 1KG-ONT effort. Track names unchanged; no data
rebuilt, counts kept honest at the current 100-sample Gustafson data. refs #36258

diff --git src/hg/makeDb/trackDb/human/gustafsonSv.html src/hg/makeDb/trackDb/human/gustafsonSv.html
index 709136842dd..e36197bbce9 100644
--- src/hg/makeDb/trackDb/human/gustafsonSv.html
+++ src/hg/makeDb/trackDb/human/gustafsonSv.html
@@ -1,23 +1,25 @@
 <h2>Description</h2>
 <p>
 This track shows structural variants (SVs) from Oxford Nanopore long-read
 whole-genome sequencing of 100 individuals in the 1000 Genomes Project,
-as released by the 1000 Genomes Project ONT Sequencing Consortium and
-described in Gustafson et al. 2024. The cohort spans all five 1000
-Genomes superpopulations and 19 subpopulations. Samples were sequenced
-with ONT R9.4.1 pores at ~37x coverage with median read N50 of ~54 kb.
+generated by the University of Washington-led 1000 Genomes Project ONT
+sequencing effort and described in Gustafson et al. 2024. The cohort spans
+all five 1000 Genomes superpopulations and 19 subpopulations. Samples were
+sequenced with ONT R9.4.1 pores at ~37x coverage with median read N50 of
+~54 kb. This is the initial 100-sample release; sequencing of the 1000
+Genomes collection is ongoing.
 </p>
 <p>
 The track contains 113,159 SVs (63,177 insertions, 49,700 deletions,
 211 inversions, 71 duplications; byte-identical duplicate records have been
 removed). Each variant was called by up to five
 independent methods (three alignment-based: Sniffles2, cuteSV, SVIM;
 and assembly-based hapdiff on Flye or Shasta/Hapdup assemblies) and then
 merged across callers and samples with Jasmine to produce a
 cross-sample consensus catalog.
 </p>
 <p>
 This 100-sample Gustafson cohort is distinct from the Vienna
 1000-Genomes-ONT release (<a href="hgTrackUi?g=lrSv1kgOnt">1KG ONT SVs</a>),
 which uses different samples, pore chemistry and callers; the two
 releases share neither samples nor calls.