3870b9e5e1b3fc67b0638fa77f6644bf5f133c9f
max
  Mon Jul 20 10:52:55 2026 -0700
lrSv: relabel lrSv1kLin and gustafsonSv, write lrSv1kLin description

Per Eichler lab request: relabel lrSv1kLin to 'Structural Variants from 1218
1KG individuals (HiFi, ONT & assembly)' and write its description page (drawn
from HPRC year 2, HGSVC3, Vienna 1KG-ONT and UW 1KG-ONT). Relabel gustafsonSv
as the University of Washington 1KG-ONT effort. Track names unchanged; no data
rebuilt, counts kept honest at the current 100-sample Gustafson data. refs #36258

diff --git src/hg/makeDb/trackDb/human/lrSv.html src/hg/makeDb/trackDb/human/lrSv.html
index 9110e43be88..6621e40f46a 100644
--- src/hg/makeDb/trackDb/human/lrSv.html
+++ src/hg/makeDb/trackDb/human/lrSv.html
@@ -61,33 +61,33 @@
   <td>33</td>
   <td>101,381</td>
 </tr>
 <tr>
   <td><a href="hgTrackUi?g=han945Sv">Han 945</a></td>
   <td>945</td>
   <td>Han Chinese, general population</td>
   <td>No</td>
   <td>~17x ONT</td>
   <td>111,288</td>
   <td>1</td>
   <td>254</td>
   <td>99,744</td>
 </tr>
 <tr>
-  <td><a href="hgTrackUi?g=gustafsonSv">1KG ONT 100</a></td>
+  <td><a href="hgTrackUi?g=gustafsonSv">1KG ONT UW</a></td>
   <td>100</td>
-  <td>1000 Genomes, 5 superpopulations / 19 subpopulations</td>
+  <td>1000 Genomes, 5 superpopulations / 19 subpopulations (University of Washington ONT effort)</td>
   <td>No</td>
   <td>~37x ONT (R9.4.1)</td>
   <td>113,159</td>
   <td>1</td>
   <td>167</td>
   <td>98,290</td>
 </tr>
 <tr>
   <td><a href="hgTrackUi?g=lrSv1kgOnt">1KG ONT Vienna</a></td>
   <td>1,019</td>
   <td>1000 Genomes, diverse</td>
   <td>No</td>
   <td>~17x ONT</td>
   <td>148,375</td>
   <td>2</td>
@@ -237,48 +237,48 @@
 <p>
 Structural variants from the Consortium of Long-Read Sequencing database
 (CoLoRSdb), from 1,427 PacBio HiFi long-read whole-genome sequences.
 ~426k SVs (insertions, deletions, inversions) called with pbsv and
 merged with Jasmine, with allele frequencies, genotype counts and
 Hardy-Weinberg statistics across the cohort.
 </p>
 
 <h3><a href="hgTrackUi?g=han945Sv">Han 945 SVs</a></h3>
 <p>
 Structural variants from 945 Han Chinese individuals. ~111k SVs
 (deletions, insertions, duplications, inversions, translocations) merged with SURVIVOR.
 Includes allele frequencies and per-sample support.
 </p>
 
-<h3><a href="hgTrackUi?g=gustafsonSv">1KG ONT 100 SVs</a></h3>
+<h3><a href="hgTrackUi?g=gustafsonSv">1KG ONT UW SVs</a></h3>
 <p>
 Structural variants from Oxford Nanopore long-read sequencing of 100
-1000 Genomes samples (5 superpopulations, 19 subpopulations) released
-by the 1000 Genomes ONT Sequencing Consortium and described in
+1000 Genomes samples (5 superpopulations, 19 subpopulations) from the
+University of Washington-led 1000 Genomes ONT sequencing effort, described in
 Gustafson et al. 2024. ~114k SVs (insertions, deletions, duplications,
 inversions) called with five callers and merged with Jasmine. This is mostly a
 separate dataset from the Vienna 1KG-ONT release described next (directly below);
 only two samples (HG03499 and HG03548) overlap.
 </p>
 
 <h3><a href="hgTrackUi?g=lrSv1kgOnt">1KG ONT Vienna SVs</a></h3>
 <p>
 Structural variants from 1,019 individuals across 26 populations (1000 Genomes ONT).
 ~161k SVs annotated with SVAN, classifying insertions and deletions by mechanism
 of origin (mobile elements, VNTRs, processed pseudogenes, etc.).
 Original coordinates are on T2T-CHM13 (hs1); the hg38 version was created via liftOver.
-Two samples (HG03499 and HG03548) overlap with the 1KG ONT 100 dataset.
+Two samples (HG03499 and HG03548) overlap with the 1KG ONT UW dataset.
 </p>
 
 <h3><a href="hgTrackUi?g=tommoJpSv">ToMMo Japanese SVs</a></h3>
 <p>
 Structural variants from 333 Japanese individuals (111 trios) from the Tohoku Medical
 Megabank (ToMMo). ~74k SVs (deletions and insertions) with trio-based Mendelian
 error rates and allele frequencies.
 </p>
 
 <h3><a href="hgTrackUi?g=aou1kSv">AoU 1K SVs</a></h3>
 <p>
 Structural variants from 1,027 individuals from the All of Us (AoU) Research Program,
 sequenced with PacBio HiFi long reads. AoU is a deeply phenotyped biobank
 that includes participants with a range of conditions (e.g. diabetes,
 hearing loss, hypertension), so the cohort is not disease-free.