27c2565b448892d69bbb365459b8b5dfe682b505
max
  Fri Jul 24 00:31:50 2026 -0700
changing lrSv labels, email from Evan Eichler

diff --git src/hg/makeDb/trackDb/human/lrSv.ra src/hg/makeDb/trackDb/human/lrSv.ra
index 02c0c62e90e..2837178089b 100644
--- src/hg/makeDb/trackDb/human/lrSv.ra
+++ src/hg/makeDb/trackDb/human/lrSv.ra
@@ -48,31 +48,31 @@
     filterLabel.insLen Insertion Length (bp)
     filter.AC 0:2854
     filterByRange.AC on
     filterLabel.AC Alt Allele Count (AC)
     filter.AF 0:1
     filterByRange.AF on
     filterLimits.AF 0:1
     filterLabel.AF Allele Frequency (AF)
     skipEmptyFields on
     priority 1
 
     track lrSv1kgOnt
     parent longReadVariants
     bigDataUrl /gbdb/$D/lrSv/1kgOnt.bb
     shortLabel 1KG ONT 1019 SVs
-    longLabel Structural Variants from 1,019 Diverse Humans (Vienna ONT, Schloissnig et al. 2025)
+    longLabel Structural Variants from 1000 Genomes Vienna ONT - 1,019 genomes (Schloissnig et al. 2025)
     type bigBed 9 +
     itemRgb on
     visibility hide
     mouseOver <b>Var</b>: $name ($svType)<br><b>SV len</b>: $svLen<br><b>Ins len</b>: $insLen<br><b>Type</b>: $insType<br><b>Family</b>: $family<br><b>AC</b>: $AC<br><b>AF</b>: $alleleFreq
     filterValues.svType DEL,INS,CPX
     filterType.svType multipleListOr
     filterLabel.svType SV Type
     filterValues.insType COMPLEX_DUP,DUP,DUP_INTERSPERSED,INV_DUP,NUMT,PSD,VNTR,chimera,orphan,partnered,solo
     filterType.insType multipleListOr
     filterLabel.insType Insertion/Deletion Type
     filterValues.family Alu,HERVK,L1,LTR5_Hs,SVA
     filterType.family multipleListOr
     filterLabel.family Transposon Family
     filter.svLen 0:49171
     filterByRange.svLen on
@@ -81,32 +81,32 @@
     filterByRange.insLen on
     filterLabel.insLen Insertion Length
     filterByRange.alleleFreq on
     filterLimits.alleleFreq 0:1
     filterLabel.alleleFreq Allele Frequency
     filter.AC 0:1816
     filterByRange.AC on
     filterLabel.AC Allele Count
     skipEmptyFields on
     dataVersion 1.1
     priority 2
 
     track gustafsonSv
     parent longReadVariants
     bigDataUrl /gbdb/$D/lrSv/gustafson.bb
-    shortLabel 1KG ONT UW 100 SVs
-    longLabel Structural Variants from University of Washington 1000 Genomes ONT sequencing (100 samples, Gustafson et al. 2024)
+    shortLabel 1KG ONT UW 97 SVs
+    longLabel Structural Variants from 1000 Genomes University of Washington ONT - 97 samples (Gustafson et al. 2024)
     type bigBed 9 +
     itemRgb on
     visibility hide
     mouseOver <b>Var</b>: $name ($svType)<br><b>SV len</b>: $svLen<br><b>Ins len</b>: $insLen<br><b>AC</b>: $AC<br><b>Samples</b>: $sampleCount
     filterValues.svType DEL,INS,DUP,INV
     filterType.svType multipleListOr
     filterLabel.svType SV Type
     filter.svLen 0:98289
     filterByRange.svLen on
     filterLabel.svLen SV Length
     filter.insLen 0:25094
     filterByRange.insLen on
     filterLabel.insLen Insertion Length
     filter.AC 0:200
     filterByRange.AC on
@@ -587,38 +587,36 @@
     filterLimits.afEur 0:1
     filterLabel.afEur AF European
     filter.afSas 0:1
     filterByRange.afSas on
     filterLimits.afSas 0:1
     filterLabel.afSas AF South Asian
     filter.nGwas 0:11
     filterByRange.nGwas on
     filterLabel.nGwas UK Biobank GWAS Hit Count
     filter.r2Ukb 0:1
     filterByRange.r2Ukb on
     filterLimits.r2Ukb 0:1
     filterLabel.r2Ukb Imputation r2 (UK Biobank)
     skipEmptyFields on
 
-    # NOT FOR RELEASE: data received from Eichler lab via email, not yet published.
-    # Do not add to lrSvAll merged track until a preprint or paper is available.
     track lrSv1kLin
     parent longReadVariants
     release alpha
     bigDataUrl /gbdb/$D/lrSv/lin1218.bb
-    shortLabel 1KG LRS 1218 SVs
-    longLabel Structural Variants from 1218 1KG individuals (HiFi, ONT & assembly)
+    shortLabel 1KG Merged 1218 SVs
+    longLabel Structural Variants from 1000 Genomes merged - 1218 individuals (HiFi, ONT & assembly)
     type bigBed 9 +
     itemRgb on
     visibility hide
     mouseOver <b>Var</b>: $name ($svType)<br><b>SV len</b>: $svLen<br><b>Ins len</b>: $insLen<br><b>AC</b>: $AC/$AN<br><b>AF</b>: $AF<br><b>AF (African)</b>: $afAfr<br><b>AF (European)</b>: $afEur<br><b>Samples</b>: $NS
     filterValues.svType DEL,INS
     filterType.svType multipleListOr
     filterLabel.svType SV Type
     filter.svLen 0:99565
     filterByRange.svLen on
     filterLabel.svLen SV Length (bp)
     filter.insLen 0:99968
     filterByRange.insLen on
     filterLabel.insLen Insertion Length (bp)
     filter.AC 0:2436
     filterByRange.AC on