0656b0a9ad98986ef3944b6ceaf305ab08ca4e39 max Fri Jul 24 01:10:13 2026 -0700 noyvertSv: swap UK Biobank r2 filter for leave-one-out metrics, revise description Per author (Boris Noyvert) request, replace the r2Ukb (UK Biobank imputation r2) filter with r2Loo and concordanceLoo, the primary SV imputation quality measures for the multi-ancestry reference panel (r2Ukb mainly reflects European-ancestry performance). Both fields already exist in noyvert.bb, so this is a trackDb-only change. Also update the description page with the author's revised text, including a comparison with the 1KG ONT Vienna dataset. refs #37888 diff --git src/hg/makeDb/trackDb/human/lrSv.ra src/hg/makeDb/trackDb/human/lrSv.ra index bb3b13296a6..fd6aa80a4d2 100644 --- src/hg/makeDb/trackDb/human/lrSv.ra +++ src/hg/makeDb/trackDb/human/lrSv.ra @@ -1,652 +1,656 @@ track longReadVariants superTrack on shortLabel Long-read SVs longLabel Structural Variants from Long-read Sequencing html lrSv group varRep visibility hide pennantIcon New red ../goldenPath/newsarch.html#071626 "Released Jul. 16, 2026" # Supertrack-level filters. These are rendered on the supertrack's own # hgTrackUi page (superTrackUi in hgTrackUi.c). Cart values stored under # "longReadVariants.filter.<field>.min/max" are inherited at read time by every # subtrack via cartOptionalStringClosestToHome() walking tdb->parent. A # subtrack-level filter always wins over the supertrack-level one. filterValues.svType DEL|DEL (Deletion),INS|INS (Insertion),INV|INV (Inversion),CPX|CPX (Complex rearrangement),DUP|DUP (Duplication),INSDEL|INSDEL (Insertion-deletion),MIXED|MIXED (multi-allele snarl),TRA|TRA (Translocation) filterType.svType multipleListOr filterLabel.svType SV Type filter.svLen 0:250000000 filterByRange.svLen on filterLabel.svLen SV Length (bp) filter.insLen 0:30176500 filterByRange.insLen on filterLabel.insLen Insertion Length (bp) filter.AC 0:30000 filterByRange.AC on filterLabel.AC Allele Count noScoreFilter on include lrSvAll.ra track colorsDbSv parent longReadVariants bigDataUrl /gbdb/$D/lrSv/colorsDb/sv.$D.bb shortLabel CoLoRSdb 1427 SVs longLabel Structural Variants from CoLoRSdb (Consortium of Long-Read Sequencing, 1,427 Samples) type bigBed 9 + itemRgb on visibility hide dataVersion v1.2.0 mouseOver <b>Var</b>: $name ($svType)<br><b>SV len</b>: $svLen<br><b>Ins len</b>: $insLen<br><b>AF</b>: $AF<br><b>AC</b>: $AC/$AN (Hom $acHom, Het $acHet, Hemi $acHemi)<br><b>Samples</b>: $NS filterValues.svType DEL,INS,INV,DUP filterType.svType multipleListOr filterLabel.svType SV Type filter.svLen 0:101381 filterByRange.svLen on filterLabel.svLen SV Length (bp) filter.insLen 0:18724 filterByRange.insLen on filterLabel.insLen Insertion Length (bp) filter.AC 0:2854 filterByRange.AC on filterLabel.AC Alt Allele Count (AC) filter.AF 0:1 filterByRange.AF on filterLimits.AF 0:1 filterLabel.AF Allele Frequency (AF) skipEmptyFields on priority 1 track lrSv1kgOnt parent longReadVariants bigDataUrl /gbdb/$D/lrSv/1kgOnt.bb shortLabel 1KG ONT 1019 SVs longLabel Structural Variants from 1000 Genomes Vienna ONT - 1,019 genomes (Schloissnig et al. 2025) type bigBed 9 + itemRgb on visibility hide mouseOver <b>Var</b>: $name ($svType)<br><b>SV len</b>: $svLen<br><b>Ins len</b>: $insLen<br><b>Type</b>: $insType<br><b>Family</b>: $family<br><b>AC</b>: $AC<br><b>AF</b>: $alleleFreq filterValues.svType DEL,INS,CPX filterType.svType multipleListOr filterLabel.svType SV Type filterValues.insType COMPLEX_DUP,DUP,DUP_INTERSPERSED,INV_DUP,NUMT,PSD,VNTR,chimera,orphan,partnered,solo filterType.insType multipleListOr filterLabel.insType Insertion/Deletion Type filterValues.family Alu,HERVK,L1,LTR5_Hs,SVA filterType.family multipleListOr filterLabel.family Transposon Family filter.svLen 0:49171 filterByRange.svLen on filterLabel.svLen SV Length filter.insLen 0:48091 filterByRange.insLen on filterLabel.insLen Insertion Length filterByRange.alleleFreq on filterLimits.alleleFreq 0:1 filterLabel.alleleFreq Allele Frequency filter.AC 0:1816 filterByRange.AC on filterLabel.AC Allele Count skipEmptyFields on dataVersion 1.1 priority 2 track gustafsonSv parent longReadVariants bigDataUrl /gbdb/$D/lrSv/gustafson.bb shortLabel 1KG ONT UW 97 SVs longLabel Structural Variants from 1000 Genomes University of Washington ONT - 97 samples (Gustafson et al. 2024) type bigBed 9 + itemRgb on visibility hide mouseOver <b>Var</b>: $name ($svType)<br><b>SV len</b>: $svLen<br><b>Ins len</b>: $insLen<br><b>AC</b>: $AC<br><b>Samples</b>: $sampleCount filterValues.svType DEL,INS,DUP,INV filterType.svType multipleListOr filterLabel.svType SV Type filter.svLen 0:98289 filterByRange.svLen on filterLabel.svLen SV Length filter.insLen 0:25094 filterByRange.insLen on filterLabel.insLen Insertion Length filter.AC 0:200 filterByRange.AC on filterLabel.AC Allele Count (placeholder) filter.sampleCount 1:100 filterByRange.sampleCount on filterLabel.sampleCount Number of Carrier Samples skipEmptyFields on priority 3 track noyvertSv parent longReadVariants bigDataUrl /gbdb/$D/lrSv/noyvert.bb shortLabel 1KG ONT Boehringer longLabel Structural Variants from 1000 Genomes ONT Boehringer - 888 Individuals (Noyvert et al. 2025) type bigBed 9 + itemRgb on visibility hide mouseOver <b>Var</b>: ${name} (${svType})<br><b>SV len</b>: ${svLen}<br><b>Ins len</b>: ${insLen}<br><b>AF</b>: ${AF}<br><b>AC</b>: ${AC}/${AN}<br><b>GWAS hits</b>: ${nGwas} filterValues.svType DEL,INS,INV,DUP,BND filterType.svType multipleListOr filterLabel.svType SV Type filter.svLen 0:28634664 filterByRange.svLen on filterLabel.svLen SV Length (bp) filter.insLen 0:45109 filterByRange.insLen on filterLabel.insLen Insertion Length (bp) filter.AC 0:1776 filterByRange.AC on filterLabel.AC Allele Count (approx) filter.AF 0:1 filterByRange.AF on filterLimits.AF 0:1 filterLabel.AF Allele Frequency filter.afAfr 0:1 filterByRange.afAfr on filterLimits.afAfr 0:1 filterLabel.afAfr AF African filter.afAmr 0:1 filterByRange.afAmr on filterLimits.afAmr 0:1 filterLabel.afAmr AF Admixed American filter.afEas 0:1 filterByRange.afEas on filterLimits.afEas 0:1 filterLabel.afEas AF East Asian filter.afEur 0:1 filterByRange.afEur on filterLimits.afEur 0:1 filterLabel.afEur AF European filter.afSas 0:1 filterByRange.afSas on filterLimits.afSas 0:1 filterLabel.afSas AF South Asian filter.nGwas 0:11 filterByRange.nGwas on filterLabel.nGwas UK Biobank GWAS Hit Count - filter.r2Ukb 0:1 - filterByRange.r2Ukb on - filterLimits.r2Ukb 0:1 - filterLabel.r2Ukb Imputation r2 (UK Biobank) + filter.r2Loo 0:1 + filterByRange.r2Loo on + filterLimits.r2Loo 0:1 + filterLabel.r2Loo Imputation r2 (leave-one-out) + filter.concordanceLoo 0:1 + filterByRange.concordanceLoo on + filterLimits.concordanceLoo 0:1 + filterLabel.concordanceLoo Minor Allele Concordance (leave-one-out) skipEmptyFields on track lrSv1kLin parent longReadVariants release alpha bigDataUrl /gbdb/$D/lrSv/lin1218.bb shortLabel 1KG Merged 1218 SVs longLabel Structural Variants from 1000 Genomes merged - 1218 individuals (HiFi, ONT & assembly) type bigBed 9 + itemRgb on visibility hide mouseOver <b>Var</b>: $name ($svType)<br><b>SV len</b>: $svLen<br><b>Ins len</b>: $insLen<br><b>AC</b>: $AC/$AN<br><b>AF</b>: $AF<br><b>AF (African)</b>: $afAfr<br><b>AF (European)</b>: $afEur<br><b>Samples</b>: $NS filterValues.svType DEL,INS filterType.svType multipleListOr filterLabel.svType SV Type filter.svLen 0:99565 filterByRange.svLen on filterLabel.svLen SV Length (bp) filter.insLen 0:99968 filterByRange.insLen on filterLabel.insLen Insertion Length (bp) filter.AC 0:2436 filterByRange.AC on filterLabel.AC Allele Count filter.AF 0:1 filterByRange.AF on filterLimits.AF 0:1 filterLabel.AF Allele Frequency filter.afAfr 0:1 filterByRange.afAfr on filterLimits.afAfr 0:1 filterLabel.afAfr AF African filter.afAmr 0:1 filterByRange.afAmr on filterLimits.afAmr 0:1 filterLabel.afAmr AF Admixed American filter.afEas 0:1 filterByRange.afEas on filterLimits.afEas 0:1 filterLabel.afEas AF East Asian filter.afEur 0:1 filterByRange.afEur on filterLimits.afEur 0:1 filterLabel.afEur AF European filter.afSas 0:1 filterByRange.afSas on filterLimits.afSas 0:1 filterLabel.afSas AF South Asian filter.NS 1:1218 filterByRange.NS on filterLabel.NS Samples with Genotype Data skipEmptyFields on track aou1kSv parent longReadVariants bigDataUrl /gbdb/$D/lrSv/aou1k.bb shortLabel AoU 1027 SVs longLabel Structural Variants from 1,027 AoU Individuals (PacBio HiFi Long-read) type bigBed 9 + itemRgb on visibility hide mouseOver <b>Var</b>: $name ($svType)<br><b>SV len</b>: $svLen<br><b>Ins len</b>: $insLen<br><b>AC (approx)</b>: $AC<br><b>AF (African)</b>: $afAfr<br><b>AF (European)</b>: $afEur filterValues.svType DEL,INS filterType.svType multipleListOr filterLabel.svType SV Type filter.svLen 0:9905 filterByRange.svLen on filterLabel.svLen SV Length filter.insLen 0:9998 filterByRange.insLen on filterLabel.insLen Insertion Length filter.AC 0:2054 filterByRange.AC on filterLabel.AC Allele Count (approx) filterByRange.afAfr on filterLimits.afAfr 0:1 filterLabel.afAfr AF African filterByRange.afEur on filterLimits.afEur 0:1 filterLabel.afEur AF European filterByRange.afEas on filterLimits.afEas 0:1 filterLabel.afEas AF East Asian skipEmptyFields on track han945Sv parent longReadVariants bigDataUrl /gbdb/$D/lrSv/han945.bb shortLabel Han 945 SVs longLabel Structural Variants from 945 Han Chinese (Long-read Sequencing) type bigBed 9 + itemRgb on visibility hide mouseOver <b>Var</b>: $name ($svType)<br><b>SV len</b>: $svLen<br><b>Ins len</b>: $insLen<br><b>AF</b>: $alleleFreq<br><b>AC</b>: $AC<br><b>Samples</b>: $sampleCount filterValues.svType DEL,INS,DUP,INV,TRA filterType.svType multipleListOr filterLabel.svType SV Type filter.svLen 0:99743 filterByRange.svLen on filterLabel.svLen SV Length filter.insLen 0:27242 filterByRange.insLen on filterLabel.insLen Insertion Length filter.AC 0:1890 filterByRange.AC on filterLabel.AC Allele Count (approx 2*SUPP) filter.sampleCount 1:945 filterByRange.sampleCount on filterLabel.sampleCount Number of Supporting Samples filter.alleleFreq 0:1 filterByRange.alleleFreq on filterLimits.alleleFreq 0:1 filterLabel.alleleFreq Allele Frequency skipEmptyFields on urls chr2="hgTracks?position=$$" track tommoJpSv parent longReadVariants bigDataUrl /gbdb/$D/lrSv/tommoJp.bb shortLabel ToMMo 333 SVs longLabel Structural Variants from 333 Japanese Individuals (ToMMo, 111 Trios) type bigBed 9 + itemRgb on visibility hide mouseOver <b>Var</b>: $name ($svType)<br><b>SV len</b>: $svLen<br><b>Ins len</b>: $insLen<br><b>AF</b>: $alleleFreq<br><b>AC</b>: $AC filterValues.svType DEL,INS filterType.svType multipleListOr filterLabel.svType SV Type filter.svLen 0:99985 filterByRange.svLen on filterLabel.svLen SV Length filter.insLen 0:30649 filterByRange.insLen on filterLabel.insLen Insertion Length filter.alleleFreq 0:1 filterByRange.alleleFreq on filterLimits.alleleFreq 0:1 filterLabel.alleleFreq Allele Frequency filter.AC 0:444 filterByRange.AC on filterLabel.AC Allele Count track ga4kSv parent longReadVariants bigDataUrl /gbdb/$D/lrSv/ga4kSv.bb shortLabel GA4K 502 SVs longLabel Structural Variants from 502 Children's Mercy GA4K Probands (PacBio HiFi) type bigBed 9 + itemRgb on visibility hide mouseOver <b>Var</b>: $name ($svType)<br><b>SV len</b>: $svLen<br><b>Ins len</b>: $insLen<br><b>AC (approx)</b>: $AC<br><b>AF</b>: $alleleFreq<br><b>Carriers</b>: $carrierCount/$sampleTotal filterValues.svType DEL,INS,DUP,INV filterType.svType multipleListOr filterLabel.svType SV Type filter.svLen 0:809711 filterByRange.svLen on filterLabel.svLen SV Length filter.insLen 0:14923 filterByRange.insLen on filterLabel.insLen Insertion Length filter.AC 0:996 filterByRange.AC on filterLabel.AC Allele Count (approx) filter.alleleFreq 0:1 filterByRange.alleleFreq on filterLimits.alleleFreq 0:1 filterLabel.alleleFreq Allele Frequency filter.carrierCount 1:498 filterByRange.carrierCount on filterLabel.carrierCount Number of Carrier Samples track decodeSv parent longReadVariants bigDataUrl /gbdb/$D/lrSv/decodeSv.bb shortLabel deCODE 3622 SVs longLabel High-confidence Structural Variants from 3,622 Icelanders (deCODE, Oxford Nanopore) type bigBed 9 + itemRgb on visibility hide mouseOver <b>Var</b>: $name ($svType)<br><b>SV len</b>: $svLen<br><b>Ins len</b>: $insLen filterValues.svType DEL,INS,INSDEL filterType.svType multipleListOr filterLabel.svType SV Type filter.svLen 0:861080 filterByRange.svLen on filterLabel.svLen SV Length filter.insLen 0:22130 filterByRange.insLen on filterLabel.insLen Insertion Length skipEmptyFields on track hprc2v21Sv parent longReadVariants bigDataUrl /gbdb/$D/lrSv/hprc2v21.bb shortLabel HPRC v2.1 233 SVs longLabel Structural Variants from HPRC v2.1 Pangenome Graph (233 samples, minigraph-cactus) type bigBed 9 + itemRgb on visibility hide mouseOver <b>Var</b>: $name ($svType)<br><b>SV len</b>: $svLen<br><b>Ins len</b>: $insLen<br><b>AF</b>: $alleleFreq<br><b>AC</b>: $AC/$alleleNumber<br><b>Samples</b>: $nSamples filterValues.svType INS,DEL filterType.svType multipleListOr filterLabel.svType SV Type filter.svLen 0:99835 filterByRange.svLen on filterLabel.svLen SV Length filter.insLen 0:1064897 filterByRange.insLen on filterLabel.insLen Insertion Length filter.AC 0:463 filterByRange.AC on filterLabel.AC Allele Count filter.alleleFreq 0:1 filterByRange.alleleFreq on filterLimits.alleleFreq 0:1 filterLabel.alleleFreq Allele Frequency filter.snarlLevel 0:7 filterByRange.snarlLevel on filterLabel.snarlLevel Snarl Level skipEmptyFields on # hprc2JasmineSv commented out: the Jasmine-merged HPRC v2 multi-caller # set is a test/comparison callset (the Hall lab is not happy with it) and # is not for release. bigBed, .as, converter and makeDoc are retained. # refs #36258 #track hprc2JasmineSv #parent longReadVariants #bigDataUrl /gbdb/$D/lrSv/hprc2Jasmine.bb #shortLabel HPRC2 Jasmine 231 SVs #longLabel Structural Variants from 231 HPRC v2 Assemblies (Jasmine merge of 14 SV callers) #type bigBed 9 + #itemRgb on #visibility dense #mouseOver <b>$name</b> ($svType) svLen=$svLen insLen=$insLen samples=$nSamples/$alleleNumber AF=$alleleFreq callers=$nCallers ($callers) #filterValues.svType DEL,INS #filterType.svType multipleListOr #filterLabel.svType SV Type #filter.svLen 0:30176500 #filterByRange.svLen on #filterLabel.svLen SV Length #filter.insLen 0:30176500 #filterByRange.insLen on #filterLabel.insLen Insertion Length #filter.AC 0:231 #filterByRange.AC on #filterLabel.AC Carrier Sample Count #filter.alleleFreq 0:1 #filterByRange.alleleFreq on #filterLimits.alleleFreq 0:1 #filterLabel.alleleFreq Carrier Frequency #filter.nCallers 1:14 #filterByRange.nCallers on #filterLabel.nCallers Number of Supporting Callers #filterValues.callers DELLY,DeBreak,DeepVariant,PAV,SVDSS,SVIM,SVIM-asm,Sniffles2,cuteSV,cuteSV-asm,dipcall,longcallD,pbsv,sawfish #filterType.callers multipleListAnd #filterLabel.callers Supporting Callers #filterValues.sources PAV,dipcall,longcallD #filterType.sources multipleListAnd #filterLabel.sources Source Pipeline #skipEmptyFields on track hgsvc2Sv parent longReadVariants bigDataUrl /gbdb/$D/lrSv/hgsvc2.bb shortLabel HGSVC2 32 SVs longLabel Structural Variants from 32 Haplotype-Resolved Genomes (HGSVC2 freeze 4, Ebert 2021) type bigBed 9 + itemRgb on visibility hide mouseOver <b>Var</b>: $name ($svType)<br><b>SV len</b>: $svLen<br><b>Ins len</b>: $insLen<br><b>Samples</b>: $sampleCount<br><b>AC</b>: $AC<br><b>AF</b>: $popAllAf filterValues.svType DEL,INS,INV filterType.svType multipleListOr filterLabel.svType SV Type filter.svLen 0:57207414 filterByRange.svLen on filterLabel.svLen SV Length filter.insLen 0:108546 filterByRange.insLen on filterLabel.insLen Insertion Length filter.AC 1:35 filterByRange.AC on filterLabel.AC Allele Count (carrier haplotypes) filter.sampleCount 1:35 filterByRange.sampleCount on filterLabel.sampleCount Sample Count filterValues.refTrf True,False filterType.refTrf multipleListOr filterLabel.refTrf In Tandem Repeat filter.refSd 0:1 filterByRange.refSd on filterLimits.refSd 0:1 filterLabel.refSd Segmental Duplication Overlap skipEmptyFields on track hgsvc3Sv parent longReadVariants bigDataUrl /gbdb/$D/lrSv/hgsvc3.bb shortLabel HGSVC3 65 SVs longLabel Structural Variants from 65 Diverse Samples (HGSVC3 ONT+HIFI) type bigBed 9 + itemRgb on visibility hide mouseOver <b>Var</b>: $name ($svType)<br><b>SV len</b>: $svLen<br><b>Ins len</b>: $insLen<br><b>Samples</b>: $sampleCount<br><b>AC</b>: $AC filterValues.svType DEL,INS,INV filterType.svType multipleListOr filterLabel.svType SV Type filter.svLen 0:30176500 filterByRange.svLen on filterLabel.svLen SV Length filter.insLen 0:30176500 filterByRange.insLen on filterLabel.insLen Insertion Length filter.AC 1:136 filterByRange.AC on filterLabel.AC Allele Count (carrier haplotypes) filter.sampleCount 1:65 filterByRange.sampleCount on filterLabel.sampleCount Sample Count filterValues.refTrf True,False filterType.refTrf multipleListOr filterLabel.refTrf In Tandem Repeat filter.refSd 0:1 filterByRange.refSd on filterLimits.refSd 0:1 filterLabel.refSd Segmental Duplication Overlap skipEmptyFields on # NOT FOR RELEASE: preliminary and unpublished (Kim et al. 2026 not out yet), # and the callset has breakend artifacts up to 190 Mb (e.g. a single "INV" # spanning all of chr4). Held on dev/alpha and kept out of the lrSvAll merge # (removed from databases.tsv) until the data is published and cleaned. track kwanhoSv parent longReadVariants release alpha bigDataUrl /gbdb/$D/lrSv/kwanho.bb shortLabel Kim PD 100 prelim longLabel Structural Variants from 100 Post-mortem Brains (Parkinson's disease, ILBD, Control; Kim et al. 2026, PacBio HiFi) - PRELIMINARY, data to be updated, contact the authors before using type bigBed 9 + itemRgb on visibility dense mouseOver <b>Var</b>: $name ($svType)<br><b>SV len</b>: $svLen<br><b>Ins len</b>: $insLen<br><b>AC</b>: $AC<br><b>AF (PD)</b>: $afPd<br><b>AF (HC)</b>: $afHc<br><b>Case-control diff</b>: $differentialRate filterValues.svType DEL,INS,DUP,INV filterType.svType multipleListOr filterLabel.svType SV Type filter.svLen 0:200000000 filterByRange.svLen on filterLabel.svLen SV Length filter.insLen 0:20145 filterByRange.insLen on filterLabel.insLen Insertion Length filter.AC 0:200 filterByRange.AC on filterLabel.AC Allele Count (PD+HC+ILBD) filter.qual 0:100 filterByRange.qual on filterLabel.qual Quality filter.afPd 0:1 filterByRange.afPd on filterLimits.afPd 0:1 filterLabel.afPd Allele Frequency (PD) filter.afHc 0:1 filterByRange.afHc on filterLimits.afHc 0:1 filterLabel.afHc Allele Frequency (HC) filter.afIlbd 0:1 filterByRange.afIlbd on filterLimits.afIlbd 0:1 filterLabel.afIlbd Allele Frequency (ILBD) filter.differentialRate -1:1 filterByRange.differentialRate on filterLimits.differentialRate -1:1 filterLabel.differentialRate Case-Control Differential (case - control) skipEmptyFields on track aprSv parent longReadVariants bigDataUrl /gbdb/$D/lrSv/apr.bb shortLabel Arab APR 53 SVs longLabel Structural Variants from the Arab Pangenome Reference (53 UAE-resident Arab samples) type bigBed 9 + itemRgb on visibility hide mouseOver <b>Var</b>: $name ($svType)<br><b>SV len</b>: $svLen<br><b>Ins len</b>: $insLen<br><b>AC</b>: $AC/$alleleNumber<br><b>AF</b>: $alleleFreq<br><b>Samples</b>: $numSamples<br><b>Alts</b>: $numAlts filterValues.svType INS,DEL,CPX,MIXED filterType.svType multipleListOr filterLabel.svType SV Type filter.svLen 0:99885 filterByRange.svLen on filterLabel.svLen SV Length filter.insLen 0:584016 filterByRange.insLen on filterLabel.insLen Insertion Length filter.AC 0:107 filterByRange.AC on filterLabel.AC Allele Count filterByRange.alleleFreq on filterLimits.alleleFreq 0:1 filterLabel.alleleFreq Allele Frequency skipEmptyFields on track cpc1Sv parent longReadVariants bigDataUrl /gbdb/$D/lrSv/cpc1.bb shortLabel CPC 58 SVs longLabel Structural Variants from the Chinese Pangenome Consortium (58 samples, CPC-only) type bigBed 9 + itemRgb on visibility hide mouseOver <b>Var</b>: $name ($svType)<br><b>SV len</b>: $svLen<br><b>Ins len</b>: $insLen<br><b>AC</b>: $AC/$alleleNumber<br><b>AF</b>: $alleleFreq<br><b>Samples</b>: $numSamples<br><b>Alts</b>: $numAlts filterValues.svType INS,DEL,CPX,MIXED filterType.svType multipleListOr filterLabel.svType SV Type filter.svLen 0:8998096 filterByRange.svLen on filterLabel.svLen SV Length filter.insLen 0:376583 filterByRange.insLen on filterLabel.insLen Insertion Length filter.AC 0:116 filterByRange.AC on filterLabel.AC Allele Count filterByRange.alleleFreq on filterLimits.alleleFreq 0:1 filterLabel.alleleFreq Allele Frequency skipEmptyFields on track chirmade101Sv parent longReadVariants bigDataUrl /gbdb/$D/lrSv/chirmade101.bb shortLabel SVatalog 101 SVs longLabel Structural Variants from 101 Long-read WGS (GWAS SVatalog, Chirmade 2026) type bigBed 9 + itemRgb on visibility hide mouseOver <b>Var</b>: $name ($svType)<br><b>SV len</b>: $svLen<br><b>Ins len</b>: $insLen<br><b>Genes</b>: $geneCount filterValues.svType DEL,INS,DUP,INV,CPX filterType.svType multipleListOr filterLabel.svType SV Type filter.svLen 0:1321484 filterByRange.svLen on filterLabel.svLen SV Length filter.insLen 0:31711 filterByRange.insLen on filterLabel.insLen Insertion Length filter.geneCount 0:200 filterByRange.geneCount on filterLabel.geneCount Gene Count skipEmptyFields on track cardSv parent longReadVariants bigDataUrl /gbdb/$D/lrSv/card.bb shortLabel CARD 351 SVs longLabel Structural Variants from 351 Brain Samples (NIH CARD Long-read ONT, NABEC + HBCC) type bigBed 9 + itemRgb on visibility hide mouseOver <b>Var</b>: ${name} (${svType})<br><b>SV len</b>: ${svLen}<br><b>Ins len</b>: ${insLen}<br><b>AF</b>: ${alleleFreq}<br><b>AC</b>: ${AC} (NABEC ${nabecAc}, HBCC ${hbccAc}) filterValues.svType DEL,INS,INV,DUP filterType.svType multipleListOr filterLabel.svType SV Type filter.svLen 0:30282742 filterByRange.svLen on filterLabel.svLen SV Length filter.insLen 0:92867161 filterByRange.insLen on filterLabel.insLen Insertion Length filter.AC 0:702 filterByRange.AC on filterLabel.AC Allele Count filter.alleleFreq 0:1 filterByRange.alleleFreq on filterLimits.alleleFreq 0:1 filterLabel.alleleFreq Allele Frequency filter.nabecAc 0:410 filterByRange.nabecAc on filterLabel.nabecAc NABEC Allele Count (European ancestry) filter.hbccAc 0:292 filterByRange.hbccAc on filterLabel.hbccAc HBCC Allele Count (African/African-admixed ancestry)