603a734862321da4d9bde067c47a4a13175acc02 mspeir Thu Jul 23 09:24:22 2026 -0700 Changes to slide decks based on CR; Adding reveal.js to source tree, rather than using CDN, refs #37874 #37904 diff --git docs/slideDecks/tutorial4-clinical-cases/tableOfContents/index.html docs/slideDecks/tutorial4-clinical-cases/tableOfContents/index.html index 9c7988c55c2..2c57435df66 100644 --- docs/slideDecks/tutorial4-clinical-cases/tableOfContents/index.html +++ docs/slideDecks/tutorial4-clinical-cases/tableOfContents/index.html @@ -33,60 +33,60 @@ <h1>Tutorial 4: Clinical case studies — Contents</h1> <p>Jump straight to any slide. <a style="text-decoration:underline" href="../presentation/">Open the full deck →</a></p> </header> <div class="wrap"> <div class="groups"> <div class="group"> <a class="gh" href="../presentation/#/0">Welcome</a> <ul class="slides"> <li><a href="../presentation/#/0"><span class="n">1</span><span>Real diagnostic variants, worked live on the Browser</span></a></li> <li><a href="../presentation/#/1"><span class="n">2</span><span>How these case studies work</span></a></li> </ul> </div> <div class="group"> <a class="gh" href="../presentation/#/2">Coding variants</a> <ul class="slides"> - <li><a href="../presentation/#/3"><span class="n">4</span><span>MECP2 — Rett syndrome</span></a></li> - <li><a href="../presentation/#/4"><span class="n">5</span><span>MAP2K2 — a small missense</span></a></li> + <li><a href="../presentation/#/3"><span class="n">4</span><span>MECP2: Rett syndrome</span></a></li> + <li><a href="../presentation/#/4"><span class="n">5</span><span>MAP2K2: a small missense</span></a></li> </ul> </div> <div class="group"> <a class="gh" href="../presentation/#/5">Read the annotation carefully</a> <ul class="slides"> - <li><a href="../presentation/#/6"><span class="n">7</span><span>TCF4 — but do you trust this exon?</span></a></li> + <li><a href="../presentation/#/6"><span class="n">7</span><span>TCF4, but do you trust this exon?</span></a></li> </ul> </div> <div class="group"> <a class="gh" href="../presentation/#/7">Splicing</a> <ul class="slides"> - <li><a href="../presentation/#/8"><span class="n">9</span><span>IGHMBP2 — a new splice site deep in an intron</span></a></li> - <li><a href="../presentation/#/9"><span class="n">10</span><span>KCTD7 — a synonymous variant that isn't silent</span></a></li> + <li><a href="../presentation/#/8"><span class="n">9</span><span>IGHMBP2: a new splice site deep in an intron</span></a></li> + <li><a href="../presentation/#/9"><span class="n">10</span><span>KCTD7: a synonymous variant that isn't silent</span></a></li> </ul> </div> <div class="group"> <a class="gh" href="../presentation/#/10">Non-coding & regulatory</a> <ul class="slides"> - <li><a href="../presentation/#/11"><span class="n">12</span><span>POU1F1 — a deletion upstream of the gene</span></a></li> - <li><a href="../presentation/#/12"><span class="n">13</span><span>SHH / ZRS — a limb enhancer in an intron of LMBR1</span></a></li> - <li><a href="../presentation/#/13"><span class="n">14</span><span>RNU4-2 — a variant in a non-coding RNA gene</span></a></li> + <li><a href="../presentation/#/11"><span class="n">12</span><span>POU1F1: a deletion upstream of the gene</span></a></li> + <li><a href="../presentation/#/12"><span class="n">13</span><span>SHH / ZRS: a limb enhancer in an intron of LMBR1</span></a></li> + <li><a href="../presentation/#/13"><span class="n">14</span><span>RNU4-2: a variant in a non-coding RNA gene</span></a></li> </ul> </div> <div class="group"> <a class="gh" href="../presentation/#/14">Structural & repeat</a> <ul class="slides"> <li><a href="../presentation/#/15"><span class="n">16</span><span>A 2.22 Mb duplication on chromosome 22</span></a></li> - <li><a href="../presentation/#/16"><span class="n">17</span><span>FGF14 — a GAA repeat expansion</span></a></li> + <li><a href="../presentation/#/16"><span class="n">17</span><span>FGF14: a GAA repeat expansion</span></a></li> </ul> </div> <div class="group"> <a class="gh" href="../presentation/#/17">More cases</a> <ul class="slides"> <li><a href="../presentation/#/18"><span class="n">19</span><span>More cases: de novo neurodevelopmental variants</span></a></li> </ul> </div> <div class="group"> <a class="gh" href="../presentation/#/19">Wrap-up</a> <ul class="slides"> <li><a href="../presentation/#/19"><span class="n">20</span><span>What these cases show</span></a></li> <li><a href="../presentation/#/20"><span class="n">21</span><span>Thank you!</span></a></li> </ul> </div>