File Changes for chmalee

v502_preview to v502_preview2 (2026-07-27 to 2026-08-04) v502

• src/hg/cgilib/cartJson.c
  • lines changed 5, context: html, text, full: html, text
    ea82eeb86ad5cf92ddf795f2d6f9ce84e33e52d5 Wed Jul 29 11:20:16 2026 -0700
    Stop hubApi /search from crashing on position matches and curated hub genomes. refs #37956 Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
• src/hg/hgHubConnect/hooks/hooklib.c
  • lines changed 50, context: html, text, full: html, text
    a8349f676d1dad81ee90c58605ecbd69453666b1 Mon Jul 27 15:14:21 2026 -0700
    Fixed a bug in hubspace uploads where the unencoded parentDir was used by tusd for the upload location while the encoded path was set in the hubSpace table. Also validate and trim parentDir in the pre-create hook and in hgMyData.js, refs #34962 Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
• src/hg/hgHubConnect/hooks/hooklib.h
  • lines changed 9, context: html, text, full: html, text
    a8349f676d1dad81ee90c58605ecbd69453666b1 Mon Jul 27 15:14:21 2026 -0700
    Fixed a bug in hubspace uploads where the unencoded parentDir was used by tusd for the upload location while the encoded path was set in the hubSpace table. Also validate and trim parentDir in the pre-create hook and in hgMyData.js, refs #34962 Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
• src/hg/hgHubConnect/hooks/pre-create.c
  • lines changed 11, context: html, text, full: html, text
    a8349f676d1dad81ee90c58605ecbd69453666b1 Mon Jul 27 15:14:21 2026 -0700
    Fixed a bug in hubspace uploads where the unencoded parentDir was used by tusd for the upload location while the encoded path was set in the hubSpace table. Also validate and trim parentDir in the pre-create hook and in hgMyData.js, refs #34962 Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
  • lines changed 4, context: html, text, full: html, text
    14a339480313e5b687eb899766347021ca94b41d Thu Jul 30 16:12:03 2026 -0700
    Call errCatchEnd() before handling the caught error in the tusd hooks, refs #37963 Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
• src/hg/hgHubConnect/hooks/pre-finish.c
  • lines changed 2, context: html, text, full: html, text
    a8349f676d1dad81ee90c58605ecbd69453666b1 Mon Jul 27 15:14:21 2026 -0700
    Fixed a bug in hubspace uploads where the unencoded parentDir was used by tusd for the upload location while the encoded path was set in the hubSpace table. Also validate and trim parentDir in the pre-create hook and in hgMyData.js, refs #34962 Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
  • lines changed 4, context: html, text, full: html, text
    14a339480313e5b687eb899766347021ca94b41d Thu Jul 30 16:12:03 2026 -0700
    Call errCatchEnd() before handling the caught error in the tusd hooks, refs #37963 Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
• src/hg/hgTracks/hgTracks.c
  • lines changed 14, context: html, text, full: html, text
    d954d1cf037e0ae2d2c76f441d558947041b9737 Mon Aug 3 14:01:16 2026 -0700
    Revert "Do not show 'visible tracks' group unless there are more than 32 top level tracks, refs Hiram complaint" This reverts commit 7f7a44a19ff9a54dbaf894365d30e394e802024b.
• src/hg/hgc/hgc.c
  • lines changed 7, context: html, text, full: html, text
    2bcc3cdc8c4d2bf0028b52de8c9a554b5bd28b6f Mon Jul 27 10:49:08 2026 -0700
    polish hub track names in bigPsl alignment links, refs #37490 Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
• src/hg/hubApi/search.c
  • lines changed 4, context: html, text, full: html, text
    ea82eeb86ad5cf92ddf795f2d6f9ce84e33e52d5 Wed Jul 29 11:20:16 2026 -0700
    Stop hubApi /search from crashing on position matches and curated hub genomes. refs #37956 Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
• src/hg/inc/trackHub.h
  • lines changed 2, context: html, text, full: html, text
    ea82eeb86ad5cf92ddf795f2d6f9ce84e33e52d5 Wed Jul 29 11:20:16 2026 -0700
    Stop hubApi /search from crashing on position matches and curated hub genomes. refs #37956 Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
• src/hg/js/hgMyData.js
  • lines changed 16, context: html, text, full: html, text
    a8349f676d1dad81ee90c58605ecbd69453666b1 Mon Jul 27 15:14:21 2026 -0700
    Fixed a bug in hubspace uploads where the unencoded parentDir was used by tusd for the upload location while the encoded path was set in the hubSpace table. Also validate and trim parentDir in the pre-create hook and in hgMyData.js, refs #34962 Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
• src/hg/lib/hdb.c
  • lines changed 3, context: html, text, full: html, text
    ea82eeb86ad5cf92ddf795f2d6f9ce84e33e52d5 Wed Jul 29 11:20:16 2026 -0700
    Stop hubApi /search from crashing on position matches and curated hub genomes. refs #37956 Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
• src/hg/lib/trackHub.c
  • lines changed 7, context: html, text, full: html, text
    ea82eeb86ad5cf92ddf795f2d6f9ce84e33e52d5 Wed Jul 29 11:20:16 2026 -0700
    Stop hubApi /search from crashing on position matches and curated hub genomes. refs #37956 Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
• src/hg/makeDb/trackDb/buildRelatedTracks
  • lines changed 10, context: html, text, full: html, text
    dc5b5de8b09d0cd08c953805e29601860bbbd2ad Mon Jul 27 11:44:51 2026 -0700
    allow '>' one-way and '~' bidirectional relatedTracks entries, refs #37390 Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
• src/hg/makeDb/trackDb/relatedTracks.ra
  • lines changed 8, context: html, text, full: html, text
    dc5b5de8b09d0cd08c953805e29601860bbbd2ad Mon Jul 27 11:44:51 2026 -0700
    allow '>' one-way and '~' bidirectional relatedTracks entries, refs #37390 Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>