15c85bf89d6cbe8dcd3aea9e44e539b8b60825f2 hiram Mon Aug 3 16:30:42 2026 -0700 OK to send out archive directory now refs #37958 diff --git src/hg/makeDb/doc/asmHubs/sendToHgdownload.sh src/hg/makeDb/doc/asmHubs/sendToHgdownload.sh index 1f13abffc0c..e8acc4ce106 100755 --- src/hg/makeDb/doc/asmHubs/sendToHgdownload.sh +++ src/hg/makeDb/doc/asmHubs/sendToHgdownload.sh @@ -90,38 +90,38 @@ printf "# successful mkdir on $dynaBlat\n" 1>&2 printf "rsync --stats -a -L -P --exclude=\"md5sum.txt\" ${srcDir}/${accession}.2bit \"qateam@$dynaBlat:${dynaServerDir}/\"\n" 1>&2 rsync --stats -a -L -P --exclude="md5sum.txt" ${srcDir}/${accession}.2bit "qateam@$dynaBlat:${dynaServerDir}/" \ 2>&1 | grep -v "X11 forwarding request" printf "rsync --stats -a -L -P --exclude=\"md5sum.txt\" ${buildDir}/*.gfidx \"qateam@$dynaBlat:${dynaServerDir}/\"\n" 1>&2 rsync --stats -a -L -P --exclude="md5sum.txt" ${buildDir}/*.gfidx "qateam@$dynaBlat:${dynaServerDir}/" \ 2>&1 | grep -v "X11 forwarding request" else printf "warning: no dynamic server indexes found in ${buildDir}/*.gfidx\n" 1>&2 fi # the single file hub genome trackDb file: -printf "rsync --delete --exclude=\"archive/\" --exclude=\"md5sum.txt\"--exclude=\"alpha.hub.txt\" --exclude=\"beta.hub.txt\" --exclude=\"public.hub.txt\" --exclude=\"user.hub.txt\" --exclude=\"hub.txt\" --exclude=\"download.hub.txt\" --stats -a -L -P \"${srcDir}/\" \"qateam@${downloadDest1}:${destDir}/\"\n" 1>&2 -# printf "rsync --delete --exclude=\"archive/\" --exclude=\"alpha.hub.txt\" --exclude=\"beta.hub.txt\" --exclude=\"public.hub.txt\" --exclude=\"user.hub.txt\" --exclude=\"hub.txt\" --exclude=\"download.hub.txt\" --stats -a -L -P \"${srcDir}/\" \"qateam@${downloadDest2}:${destDir}/\"\n" 1>&2 -printf "rsync --delete --exclude=\"archive/\" --exclude=\"md5sum.txt\" --exclude=\"alpha.hub.txt\" --exclude=\"beta.hub.txt\" --exclude=\"public.hub.txt\" --exclude=\"user.hub.txt\" --exclude=\"hub.txt\" --exclude=\"download.hub.txt\" --stats -a -L -P \"${srcDir}/\" \"qateam@${downloadDest3}:${destDir}/\"\n" 1>&2 -rsync --delete --exclude="archive/" --exclude="md5sum.txt" --exclude="alpha.hub.txt" --exclude="beta.hub.txt" --exclude="public.hub.txt" --exclude="user.hub.txt" --exclude="hub.txt" --exclude="download.hub.txt" --stats -a -L -P "${srcDir}/" "qateam@${downloadDest1}:${destDir}/" \ +printf "rsync --delete --exclude=\"md5sum.txt\"--exclude=\"alpha.hub.txt\" --exclude=\"beta.hub.txt\" --exclude=\"public.hub.txt\" --exclude=\"user.hub.txt\" --exclude=\"hub.txt\" --exclude=\"download.hub.txt\" --stats -a -L -P \"${srcDir}/\" \"qateam@${downloadDest1}:${destDir}/\"\n" 1>&2 +# printf "rsync --delete --exclude=\"alpha.hub.txt\" --exclude=\"beta.hub.txt\" --exclude=\"public.hub.txt\" --exclude=\"user.hub.txt\" --exclude=\"hub.txt\" --exclude=\"download.hub.txt\" --stats -a -L -P \"${srcDir}/\" \"qateam@${downloadDest2}:${destDir}/\"\n" 1>&2 +printf "rsync --delete --exclude=\"md5sum.txt\" --exclude=\"alpha.hub.txt\" --exclude=\"beta.hub.txt\" --exclude=\"public.hub.txt\" --exclude=\"user.hub.txt\" --exclude=\"hub.txt\" --exclude=\"download.hub.txt\" --stats -a -L -P \"${srcDir}/\" \"qateam@${downloadDest3}:${destDir}/\"\n" 1>&2 +rsync --delete --exclude="md5sum.txt" --exclude="alpha.hub.txt" --exclude="beta.hub.txt" --exclude="public.hub.txt" --exclude="user.hub.txt" --exclude="hub.txt" --exclude="download.hub.txt" --stats -a -L -P "${srcDir}/" "qateam@${downloadDest1}:${destDir}/" \ 2>&1 | grep -v "X11 forwarding request" & -# rsync --delete --exclude=\"archive/\" --exclude="alpha.hub.txt" --exclude="beta.hub.txt" --exclude="public.hub.txt" --exclude="user.hub.txt" --exclude="hub.txt" --exclude="download.hub.txt" --stats -a -L -P "${srcDir}/" "qateam@${downloadDest2}:${destDir}/" \ +# rsync --delete --exclude="alpha.hub.txt" --exclude="beta.hub.txt" --exclude="public.hub.txt" --exclude="user.hub.txt" --exclude="hub.txt" --exclude="download.hub.txt" --stats -a -L -P "${srcDir}/" "qateam@${downloadDest2}:${destDir}/" \ # 2>&1 | grep -v "X11 forwarding request" -rsync --delete --exclude="archive/" --exclude="md5sum.txt" --exclude="alpha.hub.txt" --exclude="beta.hub.txt" --exclude="public.hub.txt" --exclude="user.hub.txt" --exclude="hub.txt" --exclude="download.hub.txt" --stats -a -L -P "${srcDir}/" "qateam@${downloadDest3}:${destDir}/" \ +rsync --delete --exclude="md5sum.txt" --exclude="alpha.hub.txt" --exclude="beta.hub.txt" --exclude="public.hub.txt" --exclude="user.hub.txt" --exclude="hub.txt" --exclude="download.hub.txt" --stats -a -L -P "${srcDir}/" "qateam@${downloadDest3}:${destDir}/" \ 2>&1 | grep -v "X11 forwarding request" wait # the new single file hub genome trackDb file: printf "rsync --stats -a -L -P \"${srcDir}/download.hub.txt\" \"qateam@${downloadDest1}:${destDir}/hub.txt\"\n" 1>&2 # printf "rsync --stats -a -L -P \"${srcDir}/download.hub.txt\" \"qateam@${downloadDest2}:${destDir}/hub.txt\"\n" 1>&2 printf "rsync --stats -a -L -P \"${srcDir}/download.hub.txt\" \"qateam@${downloadDest3}:${destDir}/hub.txt\"\n" 1>&2 rsync --stats -a -L -P "${srcDir}/download.hub.txt" "qateam@${downloadDest1}:${destDir}/hub.txt" \ 2>&1 | grep -v "X11 forwarding request" & # rsync --stats -a -L -P "${srcDir}/download.hub.txt" "qateam@${downloadDest2}:${destDir}/hub.txt" \ # 2>&1 | grep -v "X11 forwarding request" rsync --stats -a -L -P "${srcDir}/download.hub.txt" "qateam@${downloadDest3}:${destDir}/hub.txt" \ 2>&1 | grep -v "X11 forwarding request" wait printf "# successful rsync\n"