59c6cecaf508798f9e7c4f3cda836a6f0105ad9a angie Wed Jun 10 13:09:00 2026 -0700 Added new lineages up through release 1.39. diff --git src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv index ba71998e9ee..3559470c462 100644 --- src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv +++ src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv @@ -1558,30 +1558,33 @@ PV.3.1 PV.3 > C23585A LF.7.7.2 LF.7.7 > A22896C QR.1 LF.7.7.2 > T1183A,C7765T > C24130T > T17166C QR.2 LF.7.7.2 > C26022T > T18894C, C22995G > C23277T LF.7.8 LF.7 > T22993C > C7051T,A10323G > A22896C ,C23589A > T18177N LF.7.9 LF.7 > C22986T > A22896C > T22884G LF.7.9.1 LF.7.9 > G25523A > C9592T,C15660T > C4586T PY.1 LF.7.9.1 > C19029T > T27484C > A10978T PY.1.1 PY.1 > A23598G > C1722T,G8863A PY.1.1.1 PY.1.1 > G11851T > G22865T RF.1 PY.1.1.1 > C12439T RF.2 PY.1.1.1 > C14183T,C25469T RF.3 PY.1.1.1 > A6366G,T22702C > A22106G RF.4 PY.1.1.1 > C8683T RF.5 PY.1.1.1 > A22995C > G22021T +RF.5.1 RF.5 > G5554T,C11967T +RF.5.2 RF.5 > G16914A > G21255T > T28678C,C29358T > C5183T,C8814T +RF.5.3 RF.5 > C25546T > T16908N,A25363N PY.1.2 PY.1 > C6781T,T6782C,C28045T PY.1.3 PY.1 > T24163C PY.1.4 PY.1 > G15380T > T21925N PY.1.4.1 PY.1 > G15380T > T21925C > C8140T > G22865T PY.1.5 PY.1 > C11173A PY.1.6 PY.1 > C29144T PY.1.7 PY.1 > C16338T PY.1.8 PY.1 > C1387T,G27516A PY.2 LF.7.9.1 > G942A PY.3 LF.7.9.1 > C17850T PY.4 LF.7.9.1 > G22567T > C22624N PY.4.1 PY.4 > C22624T > G1820A > A22995C > C14178N PY.5 LF.7.9.1 > C25624T PY.6 LF.7.9.1 > C25460T,G27788T PY.7 LF.7.9.1 > G25352T > G20915A,A21137G > A7291N,T24514N @@ -1906,35 +1909,37 @@ BA.3.2.2 BA.3.2 > G27382C,T27395A, A28996N > A22629C,G23285T > G1043N,C7173N,G26718N RE.1 BA.3.2.2 > G1043A,C7173T,G26718T > G944A > C2592T,T6856C > T1195N RE.1.1 RE.1 > T1195C > G336A,A10323G,C14293T > C19707N,C21595N,T25129N,C25413N RE.1.1.1 RE.1.1 > C19707T,C21595T,T25129C,C25413A > C22591T > C657T > C18747T > C19156T > G2494N RS.1 RE.1.1.1 > G2494A > C4012T,C14889T RS.1.1 RS.1 > C11767T > T6661A RS.1.1.1 RS.1.1 > C21930T RS.1.2 RS.1 > C11767T > C6190T,T12958C RS.1.3 RS.1 > C4891T RS.1.4 RS.1 > C10252T RS.1.5 RS.1 > C11767T > C21618T RS.2 RE.1.1.1 > G2494A > G6443A RS.3 RE.1.1.1 > G2494A > C3634T,G29449T > G24794T RS.4 RE.1.1.1 > G2494A > C28994T > T25159N RS.5 RE.1.1.1 > G2494A > C21638T,C25571G +RS.6 RE.1.1.1 > G2494A > G29781T > C593T,C21614T > A9754N,C25572N RE.1.1.2 RE.1.1 > C19707T,C21595T,T25129C,C25413A > C22591T > C657T > C18747T > G4665A,C21707T SJ.1 RE.1.1.2 > C17985T,T21252C > G662T,G25244T > C6638N,C21691N,T22333N RE.1.1.3 RE.1.1 > C19707T,C21595T,T25129C,C25413A > C22591T > C657T > C25047T RE.1.1.4 RE.1.1 > C19707T,C21595T,T25129C,C25413A > C22591T > C657T > A14224G > T3766N SS.1 RE.1.1.4 > T3766C > A17929G,G22332T > C1441N,C26028N,C27143N +SS.2 RE.1.1.4 > T3766C > T9867C,C25484T > C100N,C7765N,C22033N,C26768N RE.1.1.5 RE.1.1 > C19707T,C21595T,T25129C,C25413A > C22591T > C657T > C9693T RE.1.1.6 RE.1.1 > C19707T,C21595T,T25129C,C25413A > C22591T > C657T > C5835T RE.1.2 RE.1 > T1195C > C203T,C5654T,C9836T,C22594T,C28987T RE.2 BA.3.2.2 > G1043A,C7173T,G26718T > A3309G > C18582N,C19029N,A29221N RE.2.1 RE.2 > C18582T,C19029T,A29221G > C7000T,A16938G,C19154T,C22388T > C29160T > C1063N RE.2.1.1 RE.2.1 > C1063T > C4891T,T8803C SK.1 RE.2.1.1 > A16095G,A29086T RE.2.1.2 RE.2.1 > C1063T > C10594T > T25580C RE.2.1.3 RE.2.1 > C1063T > C10594T > C24109T > C5184T SL.1 RE.2.1.3 > C24771T RE.2.1.4 RE.2.1 > C1063T > C2023T,C23230T > C6471A > G10180N,C21658N RE.2.1.5 RE.2.1 > C1063T > C2023T,C23230T > C5144T,C16293T,C25339T RE.2.1.6 RE.2.1 > C1063T > C18431T > A5275N,C20313N RE.2.2 RE.2 > C18582T,C19029T,A29221G > C7000T,A16938G,C19154T,C22388T > C5884T,A10864G,C28791T RE.2.2.1 RE.2.2 > T1177C > G354A > C1663T @@ -3746,92 +3751,98 @@ PQ.1 NB.1.8.1 > T16456C PQ.1.1 PQ.1 > G28884C > T5143N PQ.1.2 PQ.1 > T22995C PQ.1.3 PQ.1 > C5526T > C11986N,C18252N,C29296N PQ.1.4 PQ.1 > G14131A > C24912T PQ.1.5 PQ.1 > C7299T > C25156T PQ.1.6 PQ.1 > G14131A > C21904T > T6954C PQ.1.6.1 PQ.1.6 > T22995C PQ.2 NB.1.8.1 > T25969C PQ.2.1 PQ.2 > T22995C PQ.2.1.1 PQ.2.1 > C10969T,C18814T > C21191T PQ.2.1.2 PQ.2.1 > C10969T,C18814T > G23593C > A9698N,C11195N,C27612N PQ.2.1.3 PQ.2.1 > C19263T SH.1 PQ.2.1.3 > T2080C > T1330C > T2996G > T8296N,C10252N,C10747N,T24529N,T25099N PQ.2.1.4 PQ.2.1 > C2788T +SY.1 PQ.2.1.4 > T25485C > G23126C > C10543N,G21255N PQ.2.1.5 PQ.2.1 > T24194C PQ.2.1.6 PQ.2.1 > C7420T PQ.2.1.7 PQ.2.1 > C20762T RZ.1 PQ.2.1.7 > A17008G > A22896C > T5179N,G10261N,C10702N,T11725N,C24082N RZ.2 PQ.2.1.7 > A22029T > C11962N,C29358N RZ.2.1 RZ.2 > C11962T,C29358T > G22599C > C5314N,A11576N,C15720N,C26885N PQ.2.1.8 PQ.2.1 > C13436T,G16741T,C20543T > T23386C PQ.2.1.9 PQ.2.1 > C10369T PQ.2.1.10 PQ.2.1 > C27149T PQ.2.1.11 PQ.2.1 > C24422T > T23600C,C24034T +SZ.1 PQ.2.1.11 > A4774G,A6777T > C28657T > C11704T > A23267G > T23905N PQ.2.1.12 PQ.2.1 > C6268T,T6376C PQ.2.1.13 PQ.2.1 > C21855T,T22016A > A6551N,T11737N,A11908N,C24370N,C25521N,C26768N,C28708N PQ.2.1.14 PQ.2.1 > T10612G PQ.2.1.15 PQ.2.1 > C16376T > A5353N PQ.2.1.16 PQ.2.1 > T20571C > T24235C,G25352T PQ.2.1.17 PQ.2.1 > A5235G > C6926T > T15870C,G22132T > C829N PQ.2.2 PQ.2 > A24825G PQ.2.3 PQ.2 > T20310C > G23593C PQ.2.4 PQ.2 > T17449C > T2680C PQ.2.4.1 PQ.2.4 > G21893A > A15367G PQ.2.4.2 PQ.2.4 > T22995C PQ.2.4.3 PQ.2.4 > C9246T PQ.2.4.4 PQ.2.4 > C11514T PQ.2.5 PQ.2 > T25451C PQ.2.5.1 PQ.2.5 > A23157G PQ.2.5.2 PQ.2.5 > C1912T RQ.1 PQ.2.5.2 > C13019T > A22994G > G1820A,G14632A RQ.2 PQ.2.5.2 > A22896C ,C25350T > C1471N,C4331N,T19955N PQ.2.5.3 PQ.2.5 > A17993G > G29449N PQ.2.5.4 PQ.2.5 > G25455T PQ.2.5.5 PQ.2.5 > C398T,G22599C,C26607T > G6352N,C19029N PQ.2.5.6 PQ.2.5 > C16362T > C15045T > A22896C > A28065T > C28651N PQ.2.6 PQ.2 > T15366C > G8813A,G22899C,G29348T PQ.2.7 PQ.2 > C28603T PQ.2.7.1 PQ.2.7 > A23614G > A22004C > C4084N,T17838N +PQ.2.7.2 PQ.2.7 > T22345C > C1426T > C25553T > C28677T > A22896C > C6990N,C18348N,T24799N,A25439N,G25963N,C27389N PQ.2.8 PQ.2 > C8344T PQ.2.8.1 PQ.2.8 > A22896C > G26828N RC.1 PQ.2.8.1 > G26828T > T22995C RC.2 PQ.2.8.1 > G26828T > A3138G > C28603N RC.2.1 RC.2 > C28603T > C23601A RC.3 PQ.2.8.1 > G26828T > C21952T RC.4 PQ.2.8.1 > G26828T > T3802C RC.5 PQ.2.8.1 > C2226T RC.6 PQ.2.8.1 > G26828T > C1263T > C23601A > C15026N RC.7 PQ.2.8.1 > G26828T > C5784T > T15597N RC.7.1 RC.7 > T15597C > C22329T RC.7.1.1 RC.7.1 > G23612A > T6082N,A8062N,T10123N,G13379N RC.8 PQ.2.8.1 > C3602T RC.9 PQ.2.8.1 > C26882T RC.10 PQ.2.8.1 > G26828T > A6204G,C6432T +RC.11 PQ.2.8.1 > G26828T > T12985C,C20436T,G22599A +RC.12 PQ.2.8.1 > G26828T > A7748G,A23592G > C6354T > A6616N,C13665N PQ.2.8.2 PQ.2.8 > G22427A > C21191N,C27509N PQ.2.9 PQ.2 > C18814T PQ.2.10 PQ.2 > T13668C,A27894G PQ.2.10.1 PQ.2.10 > G25483A > C21008T,C25463G > A23598G > T826N,C5575N,C6317N,A18702N,C27970N PQ.2.11 PQ.2 > C5806T > T10771C > A13703G > T5179N PQ.2.11.1 PQ.2.11 > T5179A > T4640C, T22995C PQ.2.12 PQ.2 > T712A PQ.2.12.1 PQ.2.12 > G22899C > C15277N,C16596N,C17439N PQ.2.13 PQ.2 > C27513T PQ.2.13.1 PQ.2.13 > G1820A > C22224T,G22899C > A1632N PQ.2.14 PQ.2 > C16293T PQ.2.14.1 PQ.2.14 > C14583T > C18555T,A23598G > T22995C > A25718N,C25886N,C26645N,C26807N +PQ.2.15 PQ.2 > C18377T > A24383T,G24815A > C10252N PQ.3 NB.1.8.1 > C29171T > G29234A PQ.4 NB.1.8.1 > C2842T PQ.4.1 PQ.4 > C23277T, G23599C > T22558N,C25614N,T29685N PQ.4.2 PQ.4 > C11833T > C21742T > G23126C PQ.4.3 PQ.4 > C11833T > C21742T > G22139T PQ.4.4 PQ.4 > A11319G PQ.4.5 PQ.4 > C3177T PQ.4.6 PQ.4 > G15919A > C10702N PQ.4.6.1 PQ.4.6 > C10702T > G22899A > G8114N,C9532N,C16575N PQ.4.6.2 PQ.4.6 > C10702T > G27915T > T2680N,C5178N,T20391N,C23248N RJ.1 PQ.4.6.2 > T2680C,C5178A,T20391G,C23248T > C20589T,A22012C,G28079T PQ.4.7 PQ.4 > C11833T > G13960A PQ.4.8 PQ.4 > A17409G > C26013T PQ.4.9 PQ.4 > G2534T,C5055T > A3979N,T16939N PQ.4.10 PQ.4 > C11833T > C21742T > C20235T > T21820C > A5536G @@ -3872,42 +3883,49 @@ PQ.13.2 PQ.13 > C20031T > G2035T,G3563A,G9203A,C23601T PQ.13.3 PQ.13 > C16293T,C25416T PQ.13.3.1 PQ.13.3 > C23277T > T29410N PQ.14 NB.1.8.1 > C3619T PQ.14.1 PQ.14 > A532G PQ.14.1.1 PQ.14.1 > T11371C,A16311G, T22995C > G22696N PQ.14.2 PQ.14 > C28603T > C12664T PQ.14.3 PQ.14 > C28603T > C26607T PQ.14.3.1 PQ.14.3 > A23598G RR.1 PQ.14.3.1 > A22896C ,G24047A > C1684T,T3477C,T25496N PQ.14.4 PQ.14 > C12049T PQ.15 NB.1.8.1 > C5583T > G1729N PQ.16 NB.1.8.1 > C10156T PQ.16.1 PQ.16 > A22320G,A22812C,G22820A > T20361N,T25461N,G27916N,C28677N PQ.16.1.1 PQ.16.1 > T20361C,T25461G,G27916A,C28677T > A19175G > T22995C +SV.1 PQ.16.1.1 > G25459T +SV.1.1 SV.1 > G23593C +SV.2 PQ.16.1.1 > G2324A > G28223N +SV.2.1 SV.2 > G28223A > A25208G PQ.17 NB.1.8.1 > T22995C PQ.17.1 PQ.17 > C7834T > C29708N PQ.17.2 PQ.17 > C13035T PQ.17.2.1 PQ.17.2 > C1102G > C13035N PQ.17.3 PQ.17 > C23601T PQ.17.4 PQ.17 > G23610A PQ.17.5 PQ.17 > A20658G > C29108T > C14818N PQ.17.6 PQ.17 > G25606T PQ.17.7 PQ.17 > A21343G PQ.17.7.1 PQ.17.7 > C23601T > A26046N PQ.17.7.2 PQ.17.7 > A26046G > A22896C > T6572N RK.1 PQ.17.7.2 > T6572C > G22820A +RK.1.1 RK.1 > G28986T > T5293N,T14808N +RK.1.2 RK.1 > A12088G > G7561A,T25345C +RK.1.3 RK.1 > A12088G > C16806T PQ.17.8 PQ.17 > T12946C,C27813T,C28748T > C23664T > C23987T PQ.17.9 PQ.17 > T15009C > C26111T PQ.17.10 PQ.17 > T4441C PQ.17.10.1 PQ.17.10 > C23277T PQ.17.11 PQ.17 > C23277T PQ.17.11.1 PQ.17.11 > C28603T > G22599A,G25726A PQ.17.11.2 PQ.17.11 > C28603T > C27092A > T8176N,G11250N,T12113N,A24205N PQ.17.11.3 PQ.17.11 > A3915G,C8895T,T22118C > A14010N,C14407N,T16743N,C17745N,G26062N,C28000N PQ.17.12 PQ.17 > G22599C,C27476T > C5866N,C28651N PQ.17.12.1 PQ.17.12 > C15546T > G23522A PQ.18 NB.1.8.1 > C23601T PQ.19 NB.1.8.1 > A21713G > G22599A PQ.20 NB.1.8.1 > G22104C PQ.21 NB.1.8.1 > G22289T > G9010N PQ.22 NB.1.8.1 > G23604A @@ -4247,49 +4265,51 @@ XFG.3.1.4 XFG.3.1 > T17454C > A22330G,G24368T > G18803T XFG.3.1.5 XFG.3.1 > T17454C > G22484T XFG.3.1.6 XFG.3.1 > T17454C > A25439G XFG.3.1.7 XFG.3.1 > T17454C > G22688T > C21646T > G22364N,G25563N XFG.3.1.8 XFG.3.1 > T17454C > T9412C > G3251A,C21859T > C3984T XFG.3.1.9 XFG.3.1 > T17454C > T29409C XFG.3.1.10 XFG.3.1 > T17454C > C5167T,C23673T XFG.3.1.11 XFG.3.1 > T17454C > C1288T > C29119T XFG.3.1.12 XFG.3.1 > T17454C > A5560G XFG.3.2 XFG.3 > C4763T,G6404A XFG.3.3 XFG.3_10615 > C23601T XFG.3.3.1 XFG.3.3 > C6449T SE.1 XFG.3.3.1 > C4551T > G29449N SE.2 XFG.3.3.1 > C13264T SE.2.1 SE.2 > C311A > G22865T,A23156G > C14937N +SE.2.1.1 SE.2.1 > C14937T > A22001C > T12827N XFG.3.3.2 XFG.3.3 > C1426T,C4331T,C10718A XFG.3.3.3 XFG.3.3 > G12569A,G22567T XFG.3.4 XFG.3_10615 > T28822G > C18885T XFG.3.4.1 XFG.3.4 > T15762C > T23600C QF.1 XFG.3.4.1 > C3695T,C9979T > T22293C QF.1.1 QF.1 > G28090T QF.1.1.1 QF.1.1 > G13998A > C25083T QF.2 XFG.3.4.1 > C27812T QF.2.1 QF.2 > T898C > T23485A QF.2.2 QF.2 > G29044A QF.2.2.1 QF.2.2 > C25214T > A22538G SD.1 QF.2.2.1 > G20578T SD.1.1 SD.1 > T22792C > T7441C,C20148T QF.2.2.2 QF.2.2 > C25214T > C26873T QF.2.3 QF.2 > T898C > C13247T QF.2.4 QF.2 > T898C > C21811T QF.2.5 QF.2 > C23191T QF.2.6 QF.2 > C27849T QF.3 XFG.3.4.1 > C6027T +QF.3.1 QF.3 > C26907T > C20148T > C7086T,A24813G > A2410N,C12970N,A29700N QF.4 XFG.3.4.1 > C28651T > C15960A QF.5 XFG.3.4.1 > C5284T QF.5.1 QF.5 > C23673T > C18175N QF.6 XFG.3.4.1 > G24434T QF.7 XFG.3.4.1 > G25606A QF.7.1 QF.7 > C23673T XFG.3.4.2 XFG.3.4 > G1379A QT.1 XFG.3.4.2 > C3817T QT.1.1 QT.1 > C18377T > T23600C QT.1.2 QT.1 > C18377T > C6005A,C27752T QT.2 XFG.3.4.2 > T6023C,A23148G,G28681T > T28648N QT.3 XFG.3.4.2 > A23598G XFG.3.4.3 XFG.3.4 > T15762C > T24289A QS.1 XFG.3.4.3 > C8419T QS.2 XFG.3.4.3 > A23598G @@ -4307,30 +4327,31 @@ XFG.3.5 XFG.3_10615 > A19540G XFG.3.5.1 XFG.3.5 > C18421T > C23625T XFG.3.5.2 XFG.3.5 > C23601T XFG.3.6 XFG.3_10615 > C9521T XFG.3.6.1 XFG.3.6 > C5178T > C18463T > G24386T > C19983N,C26111N XFG.3.6.2 XFG.3.6 > C5055T,A18836G,C28863T > A11947N XFG.3.6.3 XFG.3.6 > T16035C SP.1 XFG.3.6.3 > C19983T SP.2 XFG.3.6.3 > G2167T,T3613C,C20470A > C13730N,G19684N,C29065N SP.2.1 SP.2 > C13730T,G19684T,C29065T > C5284T,T6118C > C15240T > A23598G XFG.3.6.4 XFG.3.6 > T23485A > C2455N,T22702N XFG.3.7 XFG.3_10615 > C25546T XFG.3.7.1 XFG.3.7 > C23601T > T28382N,C10030N XFG.3.8 XFG.3 > A25448G XFG.3.8.1 XFG.3.8 > C3565T > T23427C > C29518N +XFG.3.8.2 XFG.3.8 > G29440A,C29635T > G22567T,T28382C XFG.3.9 XFG.3_10615 > T7999C XFG.3.9_23600 XFG.3.9 > T23600C XFG.3.10 XFG.3_10615 > C27893T XFG.3.10.1 XFG.3.10 > T3616C,C6445T,A29125G XFG.3.10.2 XFG.3.10 > A20461G > A13533N XFG.3.11 XFG > C10615T > C13608T > C15738T XFG.3.12 XFG > C10615T > C13608T > C556T XFG.3.12.1 XFG.3.12 > G29717A > C1943T, G22688T > C4900N XFG.3.13 XFG.3 > C10277T > G24398A XFG.3.13.1 XFG.3.13 > A12490G > G24095T XFG.3.13.2 XFG.3.13 > A12490G > G12080T XFG.3.14 XFG.3_10615 > C6031T,C23673T XFG.3.15 XFG.3_10615 > G28681A XFG.3.15_23600 XFG.3.15 > T23600C XFG.3.16 XFG.3_10615 > C25096T > C3565T @@ -4403,46 +4424,51 @@ XFG.5.3 XFG.5 > C22323T > C7195N,C29272N XFG.5.4 XFG.5 > T2698C XFG.5.4.1 XFG.5.4 > G25855T QW.1 XFG.5.4.1 > G1463A > A23592G QW.1.1 QW.1 > C7834T > C22088T XFG.5.4.2 XFG.5.4 > C1420T,T16695C,G24199A,T27484C,A29617G XFG.6 XFG > C20178T > C22883A XFG.6.1 XFG.6 > C24034T > C23595T XFG.6.2 XFG.6 > C24034T > T29409C XFG.6.2.1 XFG.6.2 > A22320G SC.1 XFG.6.2.1 > C10228T XFG.6.2.2 XFG.6.2 > A18585T SB.1 XFG.6.2.2 > T21414C SB.1.1 SB.1 > T1501A > G22865T XFG.6.2.3 XFG.6.2 > C9226T +SU.1 XFG.6.2.3 > A27474G > C1213T,G6647A > T23600C,C29118T > T11362N,C14649N XFG.6.3 XFG.6 > C24034T > T8359C XFG.6.3.1 XFG.6.3 > C3743T > G26730A > A1194C > C920T XFG.6.3.2 XFG.6.3 > C3743T > G26730A > A1194C > A23598G > C1594N XFG.6.3.3 XFG.6.3 > C3743T > G26730A > A1194C > G28904T > G22899A > C1528N,C2226N,C14120N +SW.1 XFG.6.3.3 > C1528T > C2226T,C14120T > G22865T,C26964T > A27373N +SW.2 XFG.6.3.3 > C1528T > C2226T,C14120T > A23148C > C3874N XFG.6.4 XFG.6 > C24034T > C8097T XFG.6.5 XFG.6 > C24034T > C23758T XFG.6.5.1 XFG.6.5 > C23601A > G3892N,C5178N,C25528N ST.1 XFG.6.5.1 > G3892A,C5178A,C25528T > T24703C > T12178C > G22865T > C23896N XFG.6.6 XFG.6 > C24034T > C5907T,C25282T,C25672T,A29621G > C25721T XFG.6.7 XFG.6 > C24034T > C17339T XFG.6.8 XFG.6 > C24034T > T6673C > C583T XFG.6.9 XFG.6 > C24034T > C27059T XFG.6.10 XFG.6 > C24034T > G28079T XFG.6.11 XFG.6 > C24034T > G18781A XFG.6.12 XFG.6 > C24034T > G2875A XFG.6.13 XFG.6 > C24034T > A23148C,T23158G +XFG.6.14 XFG.6 > C24034T > C1684T > C1878T,T23600C > C29095N +XFG.6.14.1 XFG.6.14 > C29095T > G22899A > A385N,C6730N,C15540N,A25450N XFG.7 XFG > C20178T > A28467T XFG.7.1 XFG.7 > A6351G,A9989G > A28268N XFG.7.1.1 XFG.7 > A6351G,A9989G > A28268C > A22010G,G28079T QZ.1 XFG.7.1.1 > C23625T XFG.7.1.2 XFG.7 > A6351G,A9989G > A28268C > A4822G > C19273T > G21830A,T22016C XFG.8 XFG > C20178T > C19170T > T17610C > A20163G XFG.8.1 XFG.8 > C15024T XFG.8.1.1 XFG.8.1 > G21724T,T22334C > A1124N XFG.8.2 XFG.8 > C5055T XFG.8.2.1 XFG.8.2 > C5796T > G24398A XFG.8.3 XFG.8 > C2857T XFG.8.4 XFG.8 > T18630C XFG.8.5 XFG.8 > C21306T XFG.9 XFG > C20178T > G7760A XFG.9.1 XFG.9 > A2500C,G24095T @@ -4503,51 +4529,58 @@ XFG.18.1 XFG.18 > G22567T > C11681N,C26058N XFG.19 XFG > C7113T,C14183T,C22419T > T6964N XFG.21 XFG > G20134T XFG.22 XFG > C20178T > G24434T XFG.22.1 XFG.22 > C449T > G22349T XFG.22.2 XFG.22 > C449T > C7834T XFG.22.3 XFG.22 > C449T > C29118T XFG.23 XFG > C4901A XFG.23.1 XFG.23 > C1288T > G22567T > T606N XFG.23.1.1 XFG.23.1 > T606C > C29137T > C28473A,C29367T RB.1 XFG.23.1.1 > T22191G RB.2 XFG.23.1.1 > C16173T > C23673T XFG.23.1.2 XFG.23.1 > T606C > C5944T,C18912T,C21676T,C29546T > C21811N XFG.23.1.3 XFG.23.1 > T606C > C29137T > C25083T RV.1 XFG.23.1.3 > G22899A +RV.1.1 RV.1 > C24865T > T14961C > A29700G +RV.1.2 RV.1 > C29085T > G6563A +RV.1.3 RV.1 > G4444A,G15982A > C6525T +RV.1.4 RV.1 > G2534A,T18623C > C25378N +RV.2 XFG.23.1.3 > T24412C +RV.2.1 RV.2 > G25352T > C1314N,G2468N,A7429N XFG.23.1.4 XFG.23.1 > T606C > C823A,C1780T,C8829T,C25658T,T27484C > T22334C XFG.23.1.5 XFG.23.1 > T606C > C3096T,C25613T > C15613N XFG.23.2 XFG.23 > C1288T > T23948C > C13548N,C23635N,G29179N XFG.24 XFG > C18928T > G21786T > C6286N,C11124N,C22264N,C29635N XFG.25 XFG > C18928T > C20178T > C22347T XFG.26 XFG > C20178T > G27948T XFG.26.1 XFG.26 > C6354T XFG.26.2 XFG.26 > C817T,C24421T XFG.26.2.1 XFG.26.2 > G24434T XFG.28 XFG > C20178T > C18306T XFG.29 XFG > C20178T > A13444G XFG.30 XFG > C20178T > C5183T XFG.31 XFG > C20178T > G5017A XFG.32 XFG > A22320G > C11572T > C20956A > T21941C > G4255N,G29554N XFG.33 XFG > T5045C XFG.34 XFG > C20178T > T21965C XFG.35 XFG > C20178T > G28048T > C5581T,T10913C,T19158C XFG.36 XFG > C20178T > T10567C XFG.37 XFG > A29671N > C28475A > T5911C XFG.38 XFG > A29671N > C15615T > G1598A > C4893T XFG.39 XFG > C20178T > G29706N > C29614T > T27734C +XFG.40 XFG > C20178T > C12473T,C25611T > G18803A,G22865T > G8056N,T12730N,C12973N,C13965N,C20451N,C26586N XFH JN.1.16.1 > G22132T > C5239T,C7869T,G12892A,T16600C,T21653C,A22107G, T28297C > C8818T > C21627A > C6310T > C3884T > C4993T > G4694A,C4891T,C9166T,T22566C,C23039G XFH.1 XFH > C29719A > A949G XFH.2 XFH > C16575T,G24697A XFJ B.1.1 > A23063T > T22882G,C22995A, C23525T > C10029T,G22578A,C22674T,T22679C,C22686T,G22813T,G22992A, A23055G,T23075C,T23599G,A27259C,C27807T > C10449A,A18163G,C23854A,G23948T,A24424T,T24469A,C25000T,C25584T,C26270T,C26577G,G26709A,A28271T,C28311T > T670G,C2790T,G4184A,C4321T,C9344T,A9424G,C9534T, C10198T,G10447A,C12880T,C15714T,C17410T,C19955T,A20055G,C21618T,T22200G,A22688G,G22775A,A22786C,C26060T,C26858T,G27382C,A27383T,T27384C,A29510C > A23040A,A23013A > T22917G > C22295A > A22556G,A22629C > C897A,G3431T,A7842G,C8293T,G8393A,G11042T,C12789T,T13339C,T15756A,A18492G,C21622T,G21624C,C21711T,G21941T,T22032C,C22033A,A22034G,C22208T,C22353A,G22577C,G22770A,G22895C, G22898A,A22910G,C22916T,T22942A,T23005A,G23012A,T23018C,T23019C,G23222A,C23271T,C23423T,C23604G,C24378T,C24990T,C25207T,G26529C,A26610G,C26681T,C26833T,C28958A > A6183G,C12815T > G21770N > T3565C,G11727A,C18894T,T22926C > T27810C > G22599C > G22132T > C5239T, G12892A,T16600C,T21653C,A22107G, > C21627A > C22986T > T22896C > T22884G > C22792T,T22930A,A23933G,C25844T,G27414A,T28297C > T20799C XFJ.1 XFJ > G12769T XFJ.1.1 XFJ.1 > A15036G > C29200T > A12928G XFJ.1.2 XFJ.1 > A15036G > A22010G > C14913N,C25671N,C26110N XFJ.1.3 XFJ.1 > C2388T,A21875G,A22893G > T10717N XFJ.2 XFJ > G18903A XFJ.2.1 XFJ.2 > A22995T XFJ.2.2 XFJ.2 > C29386T > C7768T XFJ.3 XFJ > G25352T XFJ.3.1 XFJ.3 > C4893T XFJ.3.1.1 XFJ.3.1 > G23599T RA.1 XFJ.3.1.1 > C4021T > A22268T @@ -4621,22 +4654,23 @@ miscBA1BA2Post8393 B.1.1 > C10029T > C23854A,G23948T,C27807T > A28271T > C10449A,C23525T,T23599G,C23604A,C26270T,C28311T > C25000T > C22995A,A23055G,A23063T,T23075C,A24424T,T24469A,C25584T,A27259C > G22578A,C22674T,T22679C,C22686T,A23040G > G22992A,A23013C > A18163G,T22882G,C26577G,G26709A > G22813T > T22200G > G22775A > C19955T > G10447A,C15714T,C26060T > A20055G > C26858T > C9534T > C12880T,C21618T > C17410T > G27382C,A27383T,T27384C > C9344T,A9424G,C9866T > A22786C > A22688G > A29510C > C10198N > C22792N > A2832G > T5386G > G8393A > G22599N XGJ XFG > G22217A,A23598G > T979A,C4534T,C6990T,T15939C XGK XFG > G22217A,A23598G > A5560G > C2065T,C5822T,C6541T,G7027T XGL XFG > G22217A,A23598G > A5560G > C6629T,C6723T,C7051T,T18765A XGM LP.8.1 > T17334G > C21627A > T21653C > T16600C > A23598G,G23856T > C4467T,C4893T,G7675T,C7869T,C8818T,C17436T,A20364G XGN XFG.3.5.2 > C10369T > A6944G > C20104T,A24819G,G24872T,C25083T,G25401A,C25693T,C25925T,C27649T XGP XFG > C4214T > C8350T > T7869C > T8818C > T5239C > G1954A,C4999T,C7113T > A12892G , C16600T > G27948T > C4893T,C6720T,C7735T,C9166A,A17460G,C18646T,C20178T,T27164C XGQ XFG > C4214T > C8350T > T7869C > T8818C > T5239C > G1954A,C4999T,C7113T > A12892G , C16600T > G27948T > A9274G,T17268C, T29409C XGR XFG > C4214T > C8350T > T7869C > T8818C > T5239C > G1954A,C4999T,C7113T > A12892G , C16600T > T2074C,G3403A,G3404A,T3814C,T5701G,G17334T,A18298G,C18885T,C25708T,C26822T,T28822G XGS XFG > C8350T > C9592T > A10978T > C3096T,C21928T, T29409C XGT JN.1 > T28297C > T22930A > G18492A ,A19326G,T21738C > T16342C,T17859C, T18894C > G15451A,C15738T, A15756T ,T15939C > T15573C,C16323T,C21627A,G22112A > C15960T,G22865T,C23039G > T11042G ,C11572T, T12789C , T12815C ,C12854T > C9866T,A10042G, A11727G ,C12473T,C12924T,G14290T > C7113T, G7842A , T8293C ,C8299T,A8390G, A8393G > T4214C,C29409T > C3096T, C5239T ,T15366C,A22995C,T23600C,G25947A,C27812T,T28822G XGU XFG.5.2 > C14318T > G2051A,C10778T,C11008T > T22792C,G22893A,A22994G,G23021A,T23277C,A23598G,G24872T,C25006T,G25352T,G25552T,C26801T,C28291A,C28297T,G28884C,C29272T, T29409C XGV XFG > C4214T > C8350T > T7869C > T8818C > T5239C > G1954A,C4999T,C7113T > C1348T,T3814C,T4723C,C5144T,G9646A,C10525T,C10969T,C12400T,C13608T,C13824T,C23188T,C24319T XGW XFG > C4214T > C8350T > T7869C > T8818C > T5239C ,C20178T > G1954A,C4999T,C7113T > C3141A,C4893T,C10228T,T14418C,A22320G,C24034T,A25067G,G26109T, T29409C XGY JN.1 > T28297C > T22930A > C7113T > G18492A ,A19326G,T21738C > T16342C,T17859C, T18894C > G15451A,C15738T, A15756T ,T15939C > T15573C,C16323T,C21627A,G22112A > C15960T,G22865T,C23039G > T11042G ,C11572T, T12789C , T12815C ,C12854T > C9866T,A10042G, A11727G ,C12473T,C12924T,G14290T > C6501A, G7842A , T8293C ,C8299T,A8390G, A8393G > C5878T,C28958A > C29409T > A22995C > T3431G , C3565T ,C3686T,C4683T,C11328T,A11947G,T13572C,C18306T,A21343G,G25617T +XGZ XFG.3.4 > T13608C > T10615C > T23600C > G6533T,C23673T,G24040T,G25606A,C25614T miscBA1BA2Pre10k B.1.1 > C10029T > C23854A,G23948T,C27807T > A28271T > C10449A,C23525T,T23599G,C23604A,C26270T,C28311T > C25000T > C22995A,A23055G,A23063T,T23075C,A24424T,T24469A,C25584T,A27259C > G22578A,C22674T,T22679C,C22686T,A23040G > G22992A,A23013C > A18163G,T22882G,C26577G,G26709A > G22813T > T22200G > G22775A > C19955T > G10447A,C15714T,C26060T > A20055G > C26858T > C12880T,C21618T > C17410T > G27382C,A27383T,T27384C > C9866N > A22786C > A22688G > A29510C > C10198T > C22792N > A2832G > T5386G > G8393A > G22599N miscBA1BA2Post13k B.1.1 > C10029T > C23854A,G23948T,C27807T > A28271T > C10449A,C23525T,T23599G,C23604A,C26270T,C28311T > C25000T > C22995A,A23055G,A23063T,T23075C,A24424T,T24469A,C25584T,A27259C > G22578A,C22674T,T22679C,C22686T,A23040G > G22992A,A23013C > A18163G,T22882G,C26577G,G26709A > G22813T > T22200G > G22775A > C19955T > C15714T,C26060T > A20055G > C26858T > C21618T > C17410T > G27382C,A27383T,T27384C > A22786C > A22688G > A29510C > C10198N > C22792N > A2832G > T5386G > G8393A > A11537G > T13195C > G22599N miscBA2BA1PostSpike B.1.1 > C10029T > C23854A,G23948T,C27807T > A28271T > C10449A,C23525T,T23599G,C23604A,C26270T,C28311T > G22578A,C22674T,T22679C,C22686T,A23040G,A23055G,A23063T,T23075C,A24424T,T24469A,C25584T > G22992A,C22995A,A23013C,C25000T,A27259C > A18163G,T22882G,C26577G,G26709A > G22813T > T22200G > G22775A > C19955T > G10447A,C15714T,C26060T > A20055G > T670G,G4184A,C4321T > C9534T > C12880T,C21618T > C17410T > C9344T,A9424G > A22786C > A22688G > C2790T > C10198N > A26530N > C9866T miscDeltaBA1Post4k B.1.1 > C21846T > C10029T > C15240T,C23854A,G23948T,C27807T > C21762T,C24130A,A28271T > C10449A,C23525T,T23599G,C23604A,C26270T,C28311T > G22578A,T22673C,C22674T,T22679C,C22686T,A23040G,A23055G,A23063T,T23075C,A24424T,T24469A,C25584T > G22992A,C22995A,A23013C,C25000T,A27259C > A18163G,T22882G,C26577G,G26709A > G22813T > G8393A,A11537G > T13195C > G22898A,A26530G > C23202A > C24503T > G23048A > G4181T > G210N > C21595N > G22599N miscDeltaBA1Post11k B.1.1 > C21846T > C10029T > C15240T,C23854A,G23948T,C27807T > C21762T,C24130A,A28271T > T13195C,C23525T,T23599G,C23604A,C26270T,C28311T > C24503T,C25000T > C22995A,A23055G,A23063T,T23075C,C23202A,A24424T,T24469A,C25584T,A27259C > G22578A,T22673C,C22674T,T22679C,C22686T,A23040G > G22992A,A23013C > A18163G,T22882G,C26577G,G26709A > G22813T > A26530G > G23048A > G22898A > C21595N > G4181T > C6402T,C7124T > C8986T,G9053T > G210N > A11332G > A11201G > G22599N miscBA.5.2CJ.1 BM.1.1 > T23031C > C1627T > T23018C miscBA.5BA.2.75 BA.5 > A28330N > A27038N > C3796N,C3927T,C4586N,C5183T,C9866N,A12444N,G15451N