ec1a4ee046073ffbd5fcf929a6bc33ea514171a2 jcasper Thu Aug 27 14:00:52 2026 -0700 Fixing an outdated cse server reference to point to soe, no ticket diff --git build/kent-core/README.md build/kent-core/README.md index 31d179c3308..211482a1ef9 100644 --- build/kent-core/README.md +++ build/kent-core/README.md @@ -5,29 +5,29 @@ The code should build with a simple "make". The binaries can then be found under "bin/". We tested this on CentOS 8, Ubuntu 20 and OSX. To install the required libraries on Ubuntu 20, run the following command: apt install make gcc g++ libpng-dev uuid-dev libmariadbclient-dev If you run into problems, you can contact genome@soe.ucsc.edu. If you want to file issues or pull-requests, please do that at the original repo, at https://github.com/ucscGenomeBrowser/kent/, not here. Changes to that repo will get merged into this repository automatically with the next release (see kent/build/kent-core/). You can find short descriptions for most command line tools here: -http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/FOOTER.txt +http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/FOOTER.txt Here are a few selected tools that are useful when building track and assembly hubs: bedToBigBed - create a bigBed file for rectangle-shaped annotations (genes, enhancers, promoters, etc) |Tool |Description | |---|---| |bedToBigBed | create a bigBed file for rectangle-shaped annotations (genes, enhancers, promoters, etc) | |bigBedToBed | the inverse of bedToBigBed | |bigBedInfo | Show information about a bigBed file. Can extract .autoSql field definitions | |wigToBigWig | create a bigWig file for signal (barchart) annotations from a .wig file | |bigWigToWig | the inverse of wigToBigWig | |bigWigInfo | show information about bigWig files |