085e756cd661df666ac2d9e1ff477363b709449a
jnavarr5
  Fri Aug 28 15:43:25 2026 -0700
Updating git to match the crontab running on /hive, no Redmine

diff --git src/hg/utils/otto/otto.crontab src/hg/utils/otto/otto.crontab
index 583a35eb768..54bb2491754 100644
--- src/hg/utils/otto/otto.crontab
+++ src/hg/utils/otto/otto.crontab
@@ -160,40 +160,40 @@
 #OMIM Upload
 HGDB_CONF=/cluster/home/otto/.hg.conf.beta
 15 05 * * *  /hive/data/outside/otto/omim/omimUploadWrapper.sh
 
 MAILTO=cells@ucsc.edu
 # Cell Browser news sec update by Matt/Brittney Sept 2022
 0 0 * * 1-5 umask 002; ~bwick/miniconda3/bin/python3.8 ~bwick/cellBrowser/ucsc/updateNewsSec -r
 
 # Update Cell Browser .json facets files using tabulate_facets.pl
 0 0 * * 1-5 cd /usr/local/apache/htdocs-cells-submit/facets && ~bwick/cellBrowser/ucsc/tabulate_facets.pl /usr/local/apache/htdocs-cells-beta/dataset.json
 0 0 * * 1-5 cd /usr/local/apache/htdocs-cells-submit/facets && /usr/local/apache/htdocs-cells-submit/facets/tsv_to_json.py 
  
 # cbAnnotServer: Cell Browser login/annotation API (RM #37492). Keeps gunicorn
 # (127.0.0.1:5051, Apache proxies /api to it) alive; restarts if down / on reboot.
 * * * * * umask 002; CBANNOT_ENV_FILE=/hive/data/inside/cells/cbAnnotServer/cbAnnot.env ~mspeir/cellBrowser/src/cbAnnotServer/deploy/watchdog.sh >> /hive/data/inside/cells/cbAnnotServer/logs/watchdog.log 2>&1
-@reboot umask 002; CBANNOT_ENV_FILE=/hive/data/inside/cells/cbAnnotServer/cbAnnot.env ~mspeir/cellBrowser/src/cbAnnotServer/deploy/watchdog.sh >> /hive/data/inside/cells/cbAnnotServer/logs/watchdog.log 2>&1
+@reboot umask 002; sleep 180; CBANNOT_ENV_FILE=/hive/data/inside/cells/cbAnnotServer/cbAnnot.env ~mspeir/cellBrowser/src/cbAnnotServer/deploy/watchdog.sh >> /hive/data/inside/cells/cbAnnotServer/logs/watchdog.log 2>&1
 
 # DE worker: Cell Browser differential expression (RM #24912). Keeps deWorker.py
 # alive (reads the /hive job queue); restarts if down / on reboot.
 #
 # MOVED (2026-08-22): the DE worker now runs from the otto crontab ON
 # hgcompute-08, not here. The compute host reads exprMatrix.bin from a /hive
 # cache it fetches over HTTP (deCache.py), so it no longer needs the web host's
 # local docroot, and DE compute is off hgwdev. These two lines are left commented
 # for history; the live copy is in otto's crontab on hgcompute-08.
 #* * * * * umask 002; DE_ENV_FILE=/hive/data/inside/cells/cbAnnotServer/de.env ~mspeir/cellBrowser/src/cbAnnotServer/de/deploy/deWorkerWatchdog.sh >> /hive/data/inside/cells/cbAnnotServer/logs/deWorker-watchdog.log 2>&1
 #@reboot   umask 002; DE_ENV_FILE=/hive/data/inside/cells/cbAnnotServer/de.env ~mspeir/cellBrowser/src/cbAnnotServer/de/deploy/deWorkerWatchdog.sh >> /hive/data/inside/cells/cbAnnotServer/logs/deWorker-watchdog.log 2>&1
 
 # Malacards update. Not done monthly, but running monthly anyways, as they don't have a fixed schedule
 
 #Format: Minute - Hour - DayofMonth month Day-of-week
 MAILTO=mhaeussl@ucsc.edu
 04 04 20 * * /hive/data/outside/otto/malacards/update.sh
 
 MAILTO=jbirgmei@ucsc.edu
 # PubTator3 dbSNP track update
 28 08 * * * /bin/zsh -c 'cd /hive/data/outside/otto/pubtatorDbSnp && ./doUpdate.sh'
 
-MAILTO=cells@ucsc.edu
-@reboot umask 0000; /cluster/home/max/htdocs-cells-submit/tusd/tusd_linux_amd64/tusd -upload-dir /hive/data/inside/cells/upload/ -port 8443 -max-size 100000000000
+#MAILTO=cells@ucsc.edu
+#@reboot umask 0000; sleep 240; /cluster/home/max/htdocs-cells-submit/tusd/tusd_linux_amd64/tusd -upload-dir /hive/data/inside/cells/upload/ -port 8443 -max-size 100000000000