14904fc02baf944d1211efdb92ac6adb39bc2393 jnavarr5 Wed Aug 12 17:21:36 2026 -0700 Moving the note to the top of the page so it gets better attention, refs #38019 diff --git src/hg/makeDb/trackDb/human/geneHancer.html src/hg/makeDb/trackDb/human/geneHancer.html index 800d1cccc8e..aa66b18409a 100644 --- src/hg/makeDb/trackDb/human/geneHancer.html +++ src/hg/makeDb/trackDb/human/geneHancer.html @@ -1,16 +1,28 @@ <h2>Description</h2> + +<div class="warn-note" style="border: 2px solid #9e5900; padding: 5px 20px; background-color: #ffe9cc;"> +<p><span style="font-weight: bold; color: #c70000;">NOTE:</span><br> +The data shown in these tracks are GeneHancer version 4.8, downloaded during May 2018. The +GeneCards team maintains a track hub with more recent GeneHancer releases. To display the +latest data, connect their +<a href="../cgi-bin/hgTracks?db=$db&hubUrl=https://cdn.genecards.org/hubs/genehancer/hub.txt" +target="_blank">GeneHancer hub</a>, or add the hub URL +<code>https://cdn.genecards.org/hubs/genehancer/hub.txt</code> on the +<a href="../cgi-bin/hgHubConnect#unlistedHubs">Track Hubs</a> page.</p> +</div> + <p> GeneHancer is a database of human regulatory elements (enhancers and promoters) and their inferred target genes, which is embedded in <a href="https://www.genecards.org/" target="_blank">GeneCards</a>, a human gene compendium. The GeneHancer database was created by integrating >1 million regulatory elements from multiple genome-wide databases. Associations between the regulatory elements and target genes were based on multiple sources of linking molecular data, along with distance, as described in Methods below. </p> <p> The GeneHancer track set contains tracks representing: <ul> <li>Regulatory elements (GeneHancers)</li> @@ -115,37 +127,30 @@ <li>Overlaps with the gene territory (intragenic)</li> <li>Proximity to the gene TSS (<2kb)</li> </ol> </ol></p> <p> Associations that are derived from more than one information source are defined as "elite" associations, which leads to the definition of the "double elite" dataset - elite gene associations of elite GeneHancers.</p> <p> More details are provided at the GeneCards <a href="https://www.genecards.org/Guide/GeneCard#enhancers" target="_blank"> information page</a>. For a full description of the methods used, refer to the GeneHancer manuscript<sup>1</sup>.</p> <p> Source data for the GeneHancer version 4.8 was downloaded during May 2018.</p> -<p> -The GeneCards team maintains a track hub with more recent GeneHancer releases. To display the -latest data, connect their -<a href="../cgi-bin/hgTracks?db=$db&hubUrl=https://cdn.genecards.org/hubs/genehancer/hub.txt" -target="_blank">GeneHancer hub</a>, or add the hub URL -<code>https://cdn.genecards.org/hubs/genehancer/hub.txt</code> on the -<a href="../cgi-bin/hgHubConnect#unlistedHubs">Track Hubs</a> page.</p> <H2>Data Access</H2> <p> Due to our agreement with the Weizmann Institute, we cannot allow full genome queries from the Table Browser or share download files. You can still access data for individual chromosomes or positional data from the <a href="../cgi-bin/hgTables">Table Browser</a>.</p> <p> GeneHancer is the property of the Weizmann Institute of Science and is not available for download or mirroring by any third party without permission. Please contact the <a target="_blank" href="https://www.weizmann.ac.il/pages/contact">Weizmann Institute</a> directly for data inquiries.</p>