7e0dfcdd7ebd1eb552c2d7a367ac02b997e74026
max
  Fri Aug 14 07:54:16 2026 -0700
longReadVariants: add Boehringer ONT 888 callset to 1000 Genomes table, reword table intro

diff --git src/hg/makeDb/trackDb/human/lrSv.html src/hg/makeDb/trackDb/human/lrSv.html
index 4901b321bcc..e4eb02ad191 100644
--- src/hg/makeDb/trackDb/human/lrSv.html
+++ src/hg/makeDb/trackDb/human/lrSv.html
@@ -244,32 +244,32 @@
   <td>1,321,484</td>
 </tr>
 </table>
 
 <p>
 Note: there is likely some overlap in sample composition across these collections.
 For example, 1000 Genomes samples are also included in HPRC and CoLoRSdb.
 </p>
 
 <h3 id='1000genomes'>1000 Genomes long-read callsets</h3>
 <p>
 Several of the datasets above are long-read callsets on the 1000 Genomes
 Project samples, produced by different groups with different technologies and
 variant-calling strategies. The
 <a href="hgTrackUi?g=lrSv1kLin">1KG Lin merged</a> track combines these and added more 1000 genomes assemblies for a
-single 1,218-individual callset (Lin et al., submitted). The table below lists
-the merged release and the callsets that contribute to it.
+single 1,218-individual callset (Lin et al., submitted). The table below
+summarizes all callsets obtained from 1000 Genomes samples.
 </p>
 <table class="stdTbl">
 <tr>
   <th>Callset</th>
   <th>N samples</th>
   <th>Study</th>
   <th>Data source</th>
   <th>Variant calling</th>
   <th>UCSC track</th>
 </tr>
 <tr>
   <td>Lin_1218</td>
   <td>1,218</td>
   <td>Lin et al., A high-resolution human pangenome structural variant resource for improved disease association</td>
   <td>HGSVC3, HPRC2 293 graph+linear, UW ONT (480; 383 newly generated by UW, 97 from Gustafson et al.), Vienna ONT (445)</td>
@@ -280,30 +280,38 @@
   <td>Vienna ONT</td>
   <td>1,019</td>
   <td>Schloissnig et al., Structural variation in 1,019 diverse humans based on long-read sequencing</td>
   <td>Low-pass 17x ONT</td>
   <td>Graph-based</td>
   <td><a href="hgTrackUi?g=lrSv1kgOnt">1KG Vienna ONT</a></td>
 </tr>
 <tr>
   <td>UW ONT</td>
   <td>100</td>
   <td>Gustafson et al., High-coverage nanopore sequencing of samples from the 1000 Genomes Project</td>
   <td>High-coverage 37x ONT</td>
   <td>Linear-reference-based</td>
   <td><a href="hgTrackUi?g=gustafsonSv">1KG UW ONT</a></td>
 </tr>
+<tr>
+  <td>Boehringer ONT 888</td>
+  <td>888</td>
+  <td>Noyvert et al., Imputation of structural variants using a multi-ancestry long-read sequencing panel enables identification of disease associations</td>
+  <td>Oxford Nanopore long reads (5 ancestry groups)</td>
+  <td>Sniffles2</td>
+  <td><a href="hgTrackUi?g=noyvertSv">1KG Boehringer ONT 888</a></td>
+</tr>
 <tr>
   <td>HPRC2 Minigraph-Cactus</td>
   <td>232</td>
   <td>Lucas et al., HPRC2: a human pangenome reference with near-complete coverage of common genetic variation</td>
   <td>Near-T2T assembly (30x-60x HiFi+ONT), <a target=_blank href="https://github.com/wwliao/hprc_release2_variant_calling">a linear callset</a> was included for Lin et al merge. </td>
   <td>Minigraph-cactus graph</td>
   <td><a href="hgTrackUi?g=hprc2v21Sv">HPRC v2.1</a></td>
 </tr>
 <tr>
   <td>HGSVC3</td>
   <td>65</td>
   <td>Logsdon et al., Complex genetic variation in nearly complete human genomes</td>
   <td>Near-T2T assembly (37-40x HiFi+ONT)</td>
   <td>Linear-reference-based</td>
   <td><a href="hgTrackUi?g=hgsvc3Sv">HGSVC3</a></td>